Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1284 ATGCTTCGCGGTTCATCAGGCTTCTACTCGTATGCCACTTACGAACGCTTGAAGGGTTGGCCCGCCTTCAACCTTGACAACACAAGGATCGCATTCAAGCTTAGAAAAGACAAGTTTAAGTATATGGCGATATCAAACAACAGGCAAAGACATATGCCGCTACCTGACGATAGATTGCCGCCTAGAGGCCAAGTCTTGGCCTACCCTGAGGCAGTTCTTCTCGTCGATCCTGTTGAGCCTGATTTTCGAGATGAGGTGGACGACAAGTACCAATATTCGTGTGAAAACAAAGATTTGCGGGTGCACGGTTGGATGTCCATTGATCATGACCCCTCAGCCGTTGGATTCTGGGTAATCACCCCTAGTGATGAGTTCCGATCCGGTGGACCCCTCAAACAATCCCTCGGCTCCCATGTCGGCCCCACCTCCCTCTCCGTATTTCACAGTGCACATTATGCTGGAGAAGATATGATATTAAAGTTCGGAGACGATGAGTCGTGGAAGAAAGTGTACGGCCCCGTTTTCATCTATCTCAATTCTTTGTCGGACGCCGTAGCTGACCCGCTAGGGCTTTGGGATGATGCAAAACGACAGATGGTAACTGAAGTTCAAAGCTGGCCTTATGTTTTCCCGGCTTCATTGGACTTCCCGAAATCAAATCAACGGGGTAGGTTGAGTGGTAGATTATTGGTCCGAGACCCGTATTTGAATGTTCGACCCTTACCCGTTAGCGGGTCATTCGTCGGGTTGGCGCCTCTAGGTGTAGCTGGCTCTTGGCAAACAGAATGTAAGGGTTATCAATTTTGGACCAGAACAGATGAACAAGGTTACTTCACTATTAGTAACATACGTGTTGGGAACTATAGTCTAAATGGATGGGTCGATGGCTTTCTTGGTGATTACCAACATAATGATGTAATTATGGTAACCCCAGATAACGAGATCAATATAGGTGAACTTATTTACGAACCTCCAAGAGATGGCTCAACTTTGTGGGAAATAGGCATTCCTGATCGTTCCGCTGCTGAATTTTACATTCCAGATCCTAATCCATCGTACATCAACAAACTTTATGTCAACGATTCTAATGATAGGTTTAGGCAATATGGATTATGGGAAAGGTATGCAGATTTGTATCCTAATGGCGATCTAATCTACACGATCGATCTTAGTGACTATACAAAAGACTGGTTTTTTGCGCAAGTCACCAGGAAGGTAGGAGATAATAGATATAAAGGAACAACTTGGCAGATCAAGTTTAGACTCGACTATGTAAACAGACTCGGAATCTATCGGTTACGCCTCGCACTAGCAACCGCACAAGCTGCTGAATTACAAGTAAGAGTAAATAATGAAGATCAAGCAAATCCACCACTATTTTCAACCGGAGTGATCGGGAGGGACAATACAATAGCAAGACATGGAATTCACGGGCTATATCGGCTCTACACAGTTGCAATTCCAGGCAGCCAGCTGCTTGATCTGGCGGAAAATACAATTTTTCTTACCCAGACAGAAAGTAAGAGCCCCTTTCAAGGGGTCATGTATGATTATATTCGTTTAGAAGGCCCCTCCTCTGTTAATTTTGGAAGCTAG 1596 45.05 MLRGSSGFYSYATYERLKGWPAFNLDNTRIAFKLRKDKFKYMAISNNRQRHMPLPDDRLPPRGQVLAYPEAVLLVDPVEPDFRDEVDDKYQYSCENKDLRVHGWMSIDHDPSAVGFWVITPSDEFRSGGPLKQSLGSHVGPTSLSVFHSAHYAGEDMILKFGDDESWKKVYGPVFIYLNSLSDAVADPLGLWDDAKRQMVTEVQSWPYVFPASLDFPKSNQRGRLSGRLLVRDPYLNVRPLPVSGSFVGLAPLGVAGSWQTECKGYQFWTRTDEQGYFTISNIRVGNYSLNGWVDGFLGDYQHNDVIMVTPDNEINIGELIYEPPRDGSTLWEIGIPDRSAAEFYIPDPNPSYINKLYVNDSNDRFRQYGLWERYADLYPNGDLIYTIDLSDYTKDWFFAQVTRKVGDNRYKGTTWQIKFRLDYVNRLGIYRLRLALATAQAAELQVRVNNEDQANPPLFSTGVIGRDNTIARHGIHGLYRLYTVAIPGSQLLDLAENTIFLTQTESKSPFQGVMYDYIRLEGPSSVNFGS 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10555096 10558325 + Conep04aG0133000.1 Cone4ag1284 436262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1284 531 Gene3D - 327 522 - -
Cone4ag1284 531 Gene3D - 23 162 IPR014718 GO:0030246(InterPro)
Cone4ag1284 531 CDD RGL4_N 1 180 - -
Cone4ag1284 531 CDD RGL4_C 332 522 - -
Cone4ag1284 531 Gene3D - 219 317 - -
Cone4ag1284 531 Pfam Polysaccharide lyase family 4, domain III 330 521 IPR029411 -
Cone4ag1284 531 Pfam Rhamnogalacturonate lyase family 1 86 IPR010325 -
Cone4ag1284 531 CDD RGL4_M 221 320 IPR029413 -
Cone4ag1284 531 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 525 IPR051850 -
Cone4ag1284 531 SUPERFAMILY Starch-binding domain-like 221 317 IPR013784 GO:0030246(InterPro)
Cone4ag1284 531 FunFam Rhamnogalacturonate lyase B 218 317 - -
Cone4ag1284 531 Pfam Polysaccharide lyase family 4, domain II 245 316 IPR029413 -
Cone4ag1284 531 SUPERFAMILY Galactose-binding domain-like 327 522 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1284 Cone-Chr4:10555096 Cone7ag0869 Cone-Chr7:6678678 4.98E-263 dispersed
Cone4ag1283 Cone-Chr4:10549015 Cone4ag1284 Cone-Chr4:10555096 3.02E-257 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1284 K18195 - csv:101203789 770.77