Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1290 ATGCCTCATAAAACGACTTACTTCTTTCCAAGGCAATTTCCTGATCGCGGATTTGAGGCGGGGTCGACATCCAAACAGAAAGTAGTTGGTCACGAGACGAAGCAAATTGTCAAAGATACTTTTAGCATTCAAAGCGATGTTGCGAAGTCGACTGATCAACGCCCGGCACGAGATCACTTTGCGGCTGCGGAGTCTTCAGCCGTATCCGATCTTTTCACGGGCGATAAATCACAAAGCAAGAAGCAATTGGCTGCTTACGATTGGTTCGTGGATAAGAAGGCTTCTAGGTCGGCATCAGCTCACGTGAAGACCTGGCTTTCTAATTGTGACGAGGACCGTGAGCTTTTGCTTCCTGCGCCTACGTCGGTGCCAGAAGTACCGGGTCCAGTATTGCCGAAGGATCGGAGTGTTGATCGGAGTTTTGACCGGCAGGTTTCTCTCCCTCGGCTATCTAGCGGGAGTAGCTATGCCGGGAGCTTGTTTTCCGGCACGGGAACGGTGGATGGGAATTTTTCCAGCGATGTTAAGGATTCTACCATGTCTAAGATGTCATCGACTTTGCCCACGGCGAGGGGTAAGGTGGTGGAGGAGGTGGAGAACAAGGAGAATTTGGCGCGGAAGTCGAGGGAGAGTTACCGTTTGCAGGAGCGTTACATTTTGCAGCTTACTTTGGCTAGAAGGCTTATTTCTCATGCTTGTCTTGCTAGTGAACTGGCGCTTATGCGAGATAGCAGAGTGGAGGTTACAGATGCTGAAACCGTTTCCTATAGGCTTTGGGCCAGTGGTTGCTTGTCTTACTCTGACAAGATATCAGATGGCTTCTACAATATTTTGGGGATGAATCCATATCTGTGGGTTATGTGTAATGACTTTGAAGAAGGTAGACAGATGCCACCACTTACATCACTTAAATCCGTTGAACCTAATGATACATCGATGGAGGTGATTCTTGTTGATAGGCGTGGTGATTCTCGCCTTAAAGAGCTTCAAGATAAAGCACAAGAGTTGTACGGTGAGTCAGAGAATACCCTAGTTTTGGTAGAGAAGCTAGGAAAACTTGTTGCCATCTATATGGGGGGCACTTTTCCAGTAGAGCAAGGAGATCTCCACTTCCACTGGAAAGTGGTGAGCAAGAGGTTAAGGGCTTTCCAGAAATGCATCGTGATTCCCATCGGCAATCTTTCTATGGGACTCTGCAGACATCGCGCAATACTTTTTAAGAAACTGGCAGATTACATAGGTTTGCCATGTCGAATAGCTCGGGGTTGCAAGTACTGTGCAGCAGATCATCGGTCTTCTTGCCTTGTCAAAATTGAAGATGAGAGGCAGTCATTGAGGGAATATCTAGTTGATCTAGTTGGGGAACCAGGAAATATATATGGTCCAGATTCCTCAATTAATGGAGGTTTCCTTTCTTCAATTCCTTCACCGTTTAAAATTTCTAATCTGAAAGAATACCATCAACCAGACCGGGAGAGTCCATCTTGTTGTCAAATTGTAAACTGCAAGTACAATTTTGCTTCACCAGAAAAATTTCCATATTCAGGAGGTGGAGAATGTCACCAAACAAAGGACAGTGGTTTAAGTAAAATTCCAAATGCTTCAACTTTTACTTCAGTTGGTCAAGATCATATGGGGATGGAGACTTCACCGATGTGTTTTGATATAAATGGGAATATTAAAAGTTGCAAGTTTCAGAGTCATGCGTTGCTGGCTGTGGAGAGCAATGCTTCTGAGGTGTTAGATTCTGCCGTAGAAGCATCTTTTTGTGAAAATTTTACTAGATTAGGTGAGAACAAGGTAGTCACACAACAAACACACAGAAAAGAGAGAATTGTGTCAGGGAATCAAGTTATAGAAAAGGGTACAAATCAAATAAAATCAAGCCTAGCTTGTAAAGCTGATGATGAGGAGGTTGAGAATAGACCTGAAAATCAAGGAAATGAAGGTCAATTTCATGCTGCAACAGTCCCAAGATATCTGACGCTTGAACCATCTCTTGCAATGGATTGGCTTGAAATCGCATGGGATGAATTATGTATGAAGGAGCGTGTCGGTGCTGGCTCATTTGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTGAAGGTTCTAACACTGCAGGATTTCCATGATGATCAATTAAAGGAGTTTTTAAGAGAGGTTGCGATAATGAAGCGTGTACGCCATCCAAATGTCGTTCTCTTCATGGGTGCTGTAACAAAGCGCCCCCATCTGTCAATAGTGACTGAGTATCTTCCTAGGGGCAGTCTCTACCGCCTTATTCACAGGCCGGCTTCTGGTGAACTGTTGGATCAGAGAAGACGGTTACGCATGGCACTGGATGTGGCCAAGGGCATCAATTATCTACATTGCCTTAACCCTCCAATAGTGCATTGGGATCTTAAATCTCCTAACTTGTTGGTAGATAAAAATTGGACTGTAAAGGTATGTGATTTTGGATTATCCAGGTTCAAAGCAAACACTTTCATATCGTCAAAATCTGTTGCTGGAACACCCGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTTATCCTTTGGGAACTTGTTACCATGGAACAACCCTGGAATGGACTTGGCCCGGCACAGGTGGTTGGAGCTGTTGCTTTCCAAAACAGAAGGCTTGCTATCCCTCCAAATACTCCCCCGTTGCTGACTTCTCTTATCGAGTCTTGCTGGGCCGATGATCCAGTTCAGCGCCCATCATTCAAAAGCATAGTTGAGTCTCTAAAGAAGTTACTCAAGTCTCCTCAGAAGTTAATACAACTTAGTCGAACGTGA 2850 44.81 MPHKTTYFFPRQFPDRGFEAGSTSKQKVVGHETKQIVKDTFSIQSDVAKSTDQRPARDHFAAAESSAVSDLFTGDKSQSKKQLAAYDWFVDKKASRSASAHVKTWLSNCDEDRELLLPAPTSVPEVPGPVLPKDRSVDRSFDRQVSLPRLSSGSSYAGSLFSGTGTVDGNFSSDVKDSTMSKMSSTLPTARGKVVEEVENKENLARKSRESYRLQERYILQLTLARRLISHACLASELALMRDSRVEVTDAETVSYRLWASGCLSYSDKISDGFYNILGMNPYLWVMCNDFEEGRQMPPLTSLKSVEPNDTSMEVILVDRRGDSRLKELQDKAQELYGESENTLVLVEKLGKLVAIYMGGTFPVEQGDLHFHWKVVSKRLRAFQKCIVIPIGNLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCAADHRSSCLVKIEDERQSLREYLVDLVGEPGNIYGPDSSINGGFLSSIPSPFKISNLKEYHQPDRESPSCCQIVNCKYNFASPEKFPYSGGGECHQTKDSGLSKIPNASTFTSVGQDHMGMETSPMCFDINGNIKSCKFQSHALLAVESNASEVLDSAVEASFCENFTRLGENKVVTQQTHRKERIVSGNQVIEKGTNQIKSSLACKADDEEVENRPENQGNEGQFHAATVPRYLTLEPSLAMDWLEIAWDELCMKERVGAGSFGTVHRAEWHGSDVAVKVLTLQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASGELLDQRRRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMEQPWNGLGPAQVVGAVAFQNRRLAIPPNTPPLLTSLIESCWADDPVQRPSFKSIVESLKKLLKSPQKLIQLSRT 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10664639 10674402 + Conep04aG0133600.1 Cone4ag1290 436268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1290 949 Gene3D Phosphorylase Kinase; domain 1 672 756 - -
Cone4ag1290 949 MobiDBLite consensus disorder prediction 119 138 - -
Cone4ag1290 949 SMART serkin_6 679 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 Pfam Protein tyrosine and serine/threonine kinase 681 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 PRINTS Tyrosine kinase catalytic domain signature 753 766 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 PRINTS Tyrosine kinase catalytic domain signature 860 882 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 PRINTS Tyrosine kinase catalytic domain signature 904 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 PRINTS Tyrosine kinase catalytic domain signature 794 812 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 Gene3D Transferase(Phosphotransferase) domain 1 758 945 - -
Cone4ag1290 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 FunFam Serine/threonine-protein kinase isoform 1 669 757 - -
Cone4ag1290 949 FunFam Serine/threonine-protein kinase CTR1 758 943 - -
Cone4ag1290 949 ProSitePatterns Protein kinases ATP-binding region signature. 685 706 IPR017441 GO:0005524(InterPro)
Cone4ag1290 949 Pfam Ethylene-responsive protein kinase Le-CTR1 251 459 - -
Cone4ag1290 949 ProSiteProfiles Protein kinase domain profile. 679 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1290 949 CDD STKc_MAP3K-like 685 933 - -
Cone4ag1290 949 SUPERFAMILY Protein kinase-like (PK-like) 657 932 IPR011009 -
Cone4ag1290 949 PANTHER SERINE-THREONINE PROTEIN KINASE 240 937 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1290 Cone-Chr4:10664639 Cone4ag1661 Cone-Chr4:12479695 2.14E-128 dispersed
Cone4ag1290 Cone-Chr4:10664639 Cone5ag0529 Cone-Chr5:2234623 2.18E-104 wgd
Cone4ag1290 Cone-Chr4:10664639 Cone7ag0865 Cone-Chr7:6610121 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82785 PF01061 ABC2_membrane 1.10E-30 CL0181 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1290 - - - 0.0