Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1293 ATGCCTGCCAACGATGGCTTTCAAGGTACATCAGCTGTATCAAATTGCTATGTATTCAAGAGCCGATTGCAAGAGTATGCACAGAAAGTGGGACTGCCTACACCTGTTTATGAAACTATTAAAGAGGGTCCATCTCATGAGCCGTTATTCCGGTCAACCGTGATATTGAAAGATTCTAGGTATGACTCCTTGACTGGGTTTTTTAACCGTAAAGCGGCTGAGCAGTCAGCTGCTGAAGTTGCTCTCATGGAGTTGTCAAAGTCCTCTGCTATCAATCAAGGCATCTCTCAACCTGTTCATGAGACTGGACTCTGCAAAAATCTTCTTCAAGAATATGCTCAAAAGATGAACTATGCAATACCCTTATATGAGTGCCAAAAAGATGAAAGCCCAGGCCGACATACCTATTTCTCATGTACCGTAGAAATTGGAGGGATTCGATATATTGGAGCAGCAGCAAGAACAAAGAAAGAAGCAGAAATCAAAGCAGCTAGAACTGCTTTATTAGCTATCAGGTCTAGCCCCACTGAGTTGTCTGGAACACCTATTATTCAAACTAACCTGACTGTAGTTCCATCCAAGAAAAGGGCGGTAGAATCAGTTTCAAATCATCAAGAAACTGCAAATACTCCAAAGCCAAAGAAACAACGGTTCAAAAAGAAAGCACAGAAGAAAAAACTCCCTCGCAAAAAGGCCAAAAAACTTCCACAAGCAGAGACAAATAATGCATTATACTCTACAACAAATATGGATGAAGTTCTGGTAGCCAATCTGGTTTCTCATGCAATGCAAACCGGAGAAGTAGAAGAAGTAGAATCTGCATATTCAGTGAGGGAAGCTATGAATGATCCGACGGCTGATATTAACTCAAGTGAGAGAGATACATCACATGCTGAGGAAAACAGCCCTTTCCCCTTCCATCTCAGCGGTTATTTAACAAACCCGCAATACAGTTCTTTAAATCCAATCCAAGGAGAAAATGGAATCTCTCATGAGATCGCATCTTCATTGTACTGTGAAGATGCCATTGCTTTTGGCACAGAAGTGAGTAAGGTTACTGAAGCTGGAGAGATGGCTCCATTAATGGATGCAATAGAGGGTTAG 1104 41.67 MPANDGFQGTSAVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPLFRSTVILKDSRYDSLTGFFNRKAAEQSAAEVALMELSKSSAINQGISQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDESPGRHTYFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRSSPTELSGTPIIQTNLTVVPSKKRAVESVSNHQETANTPKPKKQRFKKKAQKKKLPRKKAKKLPQAETNNALYSTTNMDEVLVANLVSHAMQTGEVEEVESAYSVREAMNDPTADINSSERDTSHAEENSPFPFHLSGYLTNPQYSSLNPIQGENGISHEIASSLYCEDAIAFGTEVSKVTEAGEMAPLMDAIEG 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10684318 10686983 - Conep04aG0133900.1 Cone4ag1293 436271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1293 367 PANTHER RIBONUCLEASE III 10 336 - GO:0003725(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0006396(PANTHER)|GO:0010468(PANTHER)
Cone4ag1293 367 MobiDBLite consensus disorder prediction 196 242 - -
Cone4ag1293 367 MobiDBLite consensus disorder prediction 282 306 - -
Cone4ag1293 367 Gene3D - 19 100 - -
Cone4ag1293 367 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 18 87 IPR014720 -
Cone4ag1293 367 CDD DSRM_AtDRB-like_rpt1 18 86 IPR044450 GO:0003725(InterPro)
Cone4ag1293 367 Pfam Double-stranded RNA binding motif 106 169 IPR014720 -
Cone4ag1293 367 Pfam Double-stranded RNA binding motif 20 84 IPR014720 -
Cone4ag1293 367 SUPERFAMILY dsRNA-binding domain-like 19 88 - -
Cone4ag1293 367 MobiDBLite consensus disorder prediction 214 232 - -
Cone4ag1293 367 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 104 173 IPR014720 -
Cone4ag1293 367 SMART DRBM_3 105 172 IPR014720 -
Cone4ag1293 367 SMART DRBM_3 19 86 IPR014720 -
Cone4ag1293 367 FunFam Double-stranded RNA-binding protein 1 98 173 - -
Cone4ag1293 367 FunFam double-stranded RNA-binding protein 1 16 92 - -
Cone4ag1293 367 Gene3D - 101 173 - -
Cone4ag1293 367 SUPERFAMILY dsRNA-binding domain-like 106 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1293 Cone-Chr4:10684318 Cone7ag0862 Cone-Chr7:6601170 1.05E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g526 . . Bda01g00907 . . . . . . . . . . . . . . . . . . . . . Cla08g01158 Cam08g1618 Cec08g1193 Cco08g1316 Clacu08g1317 . Cre08g1102 Cone4ag1293 Cone7ag0862 . . . . . Cme03g01812 . . . . Bpe02g01145 . . . . . . . Cma05g00538 Car05g00485 . Cpe11g00474 . . . . . . . . . . . . . . . . . Chy03g01315 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012839 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 27