Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1294 ATGAGCTCGAATGTGCTCCGTGTGATTGGGTCAGTGTTTGGTGTTTCGTTGCATGATTCGGTTTCGGACTCGGTTGTTGTGATTGCGACCACTTCCGCGGCGGGGATAATTGGTCTCTTGGCGTTTTTCTGGAGGCGGTCCGCTTACAGGAATAAGGAGTTGAAGCCGGTTGTGGTGCCTGCGTTTTCTTTGTCTAAGGAGAAAGACGACACTGAGGCTGAGATTGAGTCGGGGAAGGTTAGGGTCACCATCTTCTTTGGTACTCAGACTGGGACCGCAGAGGGATTCGCTAAGGGTCTAACAGAGGAGATTAGAGCTAGATACGAAAAAGCAGCTGTCAAAGTTATTGACTTGGATGATTATGCTGTGGATGACGATCAATATGAAGTAAAACTGAAGAAAGAGACTTTGGCTTTTTTTCTGGTCGCCACTTATGGAGATGGAGAACCCACTGATAATGCTGTGGGATTTTATAAATGGTTTACTGAGGGAAAAGATCAAGGTGATTGGCTTCAACAACTATCTTATGGCGTTTTTGGTCTTGGGAACAGGCAATATGAACATTTCAACAAGATTGCCAAAGTGCTTGACGAACAACTTAGTGAACAAGGTGCAAAGCAGCTCATTCCTGTTGGCCTAGGTGATGATGATCAAAGTATCAAGGATGATTTTGCTAATTGGAAGGAGCTACTGTGGCCTGAGTTAGATCAATTACTACGCCACGAGGTTGATGGAAATACTGCAGCCACGCAATATACTGCTGTTATTCCTCAATATCGAGTTGTGATTCATGAACTTACCGTACAGTCTTCTGAAGAGAAATGTTCAAATTTGACCAATGGCACTTCTTATGATATTCACTATCCTTGTAGAGTCAATGTTGCGGTTCAGAGAGAGTTGCACAATCCCGAGTCTGAGCGCTCTTGCATACACCTTGAGTTTGATATTTCTGGGACTGGCATTATTTATGAAACTGGGGACCACGTGGGAGTATATGCCGAGAATAGTGATGAAACTGTTGAAATGGCTGCAAAATTGTTGGGTCAACCGCTAGATTTGTTGTTCTCCATTCACACTGACAGTGATGATGGCACATCTCTTGTAAGCTCATTGCCACCTCCTTTCCCTGGTCCATGCACACTTCGCAGTGCCTTGGCACATTATGCAGATCTCTTGAACCCTCCTCGGAAGGCCGCTCTTGTTGCCTTGGGTGCATATGCTGTTGAATCAAGTGAAGCAGCAAGACTCAAGCTTTTATCATCGCCTCAGGGAAAAGGTGAGTATTCAAAGTGGGTTGTTGGTAGTCAGAGGAGTCTCCTAGAGATAATGGCCGAGTTCCCATCGGCCAAACCCCCCCTTGGTGTATTTTTTGCTGCCATAGCCCCACGTTTACAGCCACGCTACTATTCGATCTCATCTTCTCCAAGATCTGTCCCTAATAGAGTTCATGTTACATGTGCTTTGGTTCATGGTCCAACTCCAAGTGGAAGAATTCACAGTGGAGTGTGTTCAACCTGGATGAAGAAAGCAGTTTCTCTAGAAAAAAGCCGGGACAGTAGCTGGGCCCCTATTTTTATTAGGACATCAAATTTCAAGTTACCAGCCAATCATTCTACTCCAATCATTATGGTGGGACCTGGAACTGGTTTGGCACCTTTCAGAGGATTTCTACAGGAAAGAATGGTCCTTAAGGAGGAGGGAGTCCAACTTGGTCCTGCTTTACTGTTCTTCGGATGTAGAAACCGCAAACAAGACTTCATTTACGGGGATGAATTAAATTGTTTTCTAGAACAGGGCACTCTTTCAGAACTCATTCTTGCATTCTCAAGGGAGGGACAAGAAAAGGAGTATGTTCAACATAAGATGACAGTGAAAGCAGCTTATATTTGGGACCTGATATCTAAAGGTGGGTATCTTTATGTCTGGTGA 1929 44.63 MSSNVLRVIGSVFGVSLHDSVSDSVVVIATTSAAGIIGLLAFFWRRSAYRNKELKPVVVPAFSLSKEKDDTEAEIESGKVRVTIFFGTQTGTAEGFAKGLTEEIRARYEKAAVKVIDLDDYAVDDDQYEVKLKKETLAFFLVATYGDGEPTDNAVGFYKWFTEGKDQGDWLQQLSYGVFGLGNRQYEHFNKIAKVLDEQLSEQGAKQLIPVGLGDDDQSIKDDFANWKELLWPELDQLLRHEVDGNTAATQYTAVIPQYRVVIHELTVQSSEEKCSNLTNGTSYDIHYPCRVNVAVQRELHNPESERSCIHLEFDISGTGIIYETGDHVGVYAENSDETVEMAAKLLGQPLDLLFSIHTDSDDGTSLVSSLPPPFPGPCTLRSALAHYADLLNPPRKAALVALGAYAVESSEAARLKLLSSPQGKGEYSKWVVGSQRSLLEIMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRSVPNRVHVTCALVHGPTPSGRIHSGVCSTWMKKAVSLEKSRDSSWAPIFIRTSNFKLPANHSTPIIMVGPGTGLAPFRGFLQERMVLKEEGVQLGPALLFFGCRNRKQDFIYGDELNCFLEQGTLSELILAFSREGQEKEYVQHKMTVKAAYIWDLISKGGYLYVW 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10687596 10694420 + Conep04aG0134000.1 Cone4ag1294 436272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1294 642 Pfam Flavodoxin 84 227 IPR008254 GO:0010181(InterPro)
Cone4ag1294 642 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 287 534 IPR017927 GO:0016491(InterPro)
Cone4ag1294 642 SUPERFAMILY Riboflavin synthase domain-like 263 531 IPR017938 -
Cone4ag1294 642 PRINTS Flavodoxin signature 83 96 IPR001094 GO:0010181(InterPro)
Cone4ag1294 642 PRINTS Flavodoxin signature 139 150 IPR001094 GO:0010181(InterPro)
Cone4ag1294 642 PRINTS Flavodoxin signature 197 216 IPR001094 GO:0010181(InterPro)
Cone4ag1294 642 PRINTS Flavodoxin signature 173 183 IPR001094 GO:0010181(InterPro)
Cone4ag1294 642 ProSiteProfiles Flavodoxin-like domain profile. 82 232 IPR008254 GO:0010181(InterPro)
Cone4ag1294 642 Gene3D - 533 642 IPR039261 -
Cone4ag1294 642 Gene3D - 43 251 IPR029039 -
Cone4ag1294 642 Gene3D - 333 465 IPR023173 GO:0016491(InterPro)
Cone4ag1294 642 FunFam NADPH--cytochrome P450 reductase 63 251 - -
Cone4ag1294 642 Gene3D Translation factors 289 532 - -
Cone4ag1294 642 PANTHER NITRIC OXIDE SYNTHASE-RELATED 68 641 - GO:0003958(PANTHER)|GO:0005829(PANTHER)|GO:0010181(PANTHER)|GO:0016491(PANTHER)|GO:0050660(PANTHER)
Cone4ag1294 642 FunFam NADPH--cytochrome P450 reductase 2 531 611 - -
Cone4ag1294 642 FunFam NADPH--cytochrome P450 reductase 333 465 - -
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 323 333 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 501 510 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 542 561 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 584 595 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 467 474 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 571 580 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 615 631 IPR001709 GO:0016491(InterPro)
Cone4ag1294 642 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 530 641 IPR039261 -
Cone4ag1294 642 Pfam Oxidoreductase NAD-binding domain 543 634 IPR001433 GO:0016491(InterPro)
Cone4ag1294 642 SUPERFAMILY Flavoproteins 79 242 IPR029039 -
Cone4ag1294 642 Pfam FAD binding domain 285 506 IPR003097 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1294 K00327 - - mdm:114826602 954.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0711 Cone-Chr2:32727885 Cone4ag1294 Cone-Chr4:10687596 1.29E-284 dispersed
Cone4ag1294 Cone-Chr4:10687596 Cone11ag0186 Cone-Chr11:897864 1.38E-289 transposed
Cone4ag1294 Cone-Chr4:10687596 Cone18ag1299 Cone-Chr18:9068664 1.57E-288 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g522 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001035 5 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 2 3 2 2 4 3 2 81