Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1297 ATGGAGAATGCAGAGACGAGGCCGGCTGATTCTTCCCAATGTGTGAGAGTTGCAGTTAACATCAGGCCTTTGATTACTTCCGAACTTATGCTTGGATGTACCGATTGCATTACGGTTGTTCCAGGAGAACCACAGATTCAAATTGGGTCGCATTCCTTCACCTATGATCATGTATATGGTGCTACTGGATCACTATCTTCTACCATATATGATGATTGTGTCGGTCCGCTTGTCGATGTGCTCTTCCATGGATACAATGCCACTGTTCTTGCGTATGGACAGACGGGCTCGGGGAAGACTTACACAATGGGTACAAACTATGCCGGGGAAGGAAGTGATGGAATTATCCCTAAAGTAATGGAAAGCATATTTAAGAAAGTTGAGAACATCAAAACTTCGACAGAGTTCTTGATTAGAGTATCATTCATTGAGATATTTAAAGAAGACGTATTTGATTTGCTTGAGCAAAATTCGTCCGGGTTAGCCAAAGGTGAAGGAATTCCTCCAGGAAAGCCAGCTGCTCCTGCAAGAGTTCCTATACAAATTAGAGAAACAGCAAGTGGAGGTATAACACTGGCTGGCGTCACTGAGGCAGAAGTTAGGACAGTAGAAGAAATGGCATCATACCTGTTACGTGGTTCCTTAGCGCGTGCAACTGCAAGCACTAACATGAATAGCCAGTCAAGTCGTTCACATGCCATATTCACAATAACTGTGGAGCAGAAGAGAATTTCTAACTGCCATGCTGTAGCAACTCATGATGACCTGAGTGGTGATGATATTCTCTGTGCAAAACTGCACCTAGTGGACCTTGCCGGTTCCGAGAGAGCAAAACGAACAGGTGCTGATGGAATGCGTCTTAAAGAAGGAATTCATATTAACAAGGGTTTACTCGCTCTCGGAAACGTTATAAGCGCCTTGGGAGATGAGAAGAAGCGGAAAGAAGGAGGTTTTGTTCCCTACCGTGATAGCAAGTTAACTCGCTTACTACAGGATTCTCTTGGAGGGAACAGCAAAACTGTGATGATTGCATGTGTTAGTCCCGCTGATACAAATGCTGAGGAAACCTTGAATACTTTAAAGTACGCGAATCGTGCTCGAAACATTCAGAACAAGGCAGTTGTCAATCGTGATCCAGCAGCGGCACACATTCAGAGAATGCGCAGCCAAATTGAGCAGTTGCAATCTGAGCTATTATTCTATCGTACTGATGCTGGTTCGCCTTTTGAAGAAGTTCAGATTCTAAAGCACAAAGTATCATTACTTGAAGCAAGCAATGCAGAGCTTCAAAGGGAGCTTCAAGAACGGCGAGTCGTGTGCGAGCATCTATCAAAATGTGCTATTGATTCTCAGGTTGAAAAGGATAAACTAGTCATGAAAATTGAAATGGCTCGAAATGGTAAATCTTGGGACGAGATTGACTCCGGTTCAAGTCAGGATTCTGATTTAGTGAAGACATATGTGTCAAAAATTCAAGAGCTAGAAAGCGAACTGTTACACTTGAGAAACTTCGCCAACTCGAAACACAATCTATTTGTTGAGTGTCATGACTCATATGAAGACAGGCCTCACTCAAATGGTGCATTATTTCCATGTGCGAATGAATATTCCTCTGATTACCATTCCGTAGGTGTAGTAGATATTTCAGATGAGATCGAAGATCAAGAAAAGGAGCTTGAACACTCTTCTCTACAAGAAAAATTGGATATGGAACTCAAAGAACTGGATAAAAGACTAGAACAAAAGGAGGCGGAAATGAAGCGGTTTGCTGGTGTTGATACCACAGTACTCAAACATCATTATGAAAAGAAAGTTCATGAGTTGGAAAAAGAGAAGAAAGTCTTGCAGAAAGAGATTGAGGACCTTAGACATAATCTTTCAAATATATCATCTACATCTGACGACGGTGCTCAGAAGTTGAAGGAAGATTATCTTCAGAAATTGAACGTCCTTGAAGCACAGGTTTCAGAGTTGAAGAAGAAGCAAGATGCTCAAGCTCAACTATTAAGGCAAAAGCAAAAGAGTGATGAGGCAGCAAAAAGACTACAGGATGATATTCAAAGAATTAAGTCCCAAAAGGTTCAACTGCAACACAAAATTAAGCAAGAATCTGAGCAGTTCAGGTTGTGGAAAGCATCACGAGAAAAAGAAGTTCTCCAGCTCAAGAAAGAGGGAAGGAGGAATGAGTATGAGATGCATAAGCTCAAGGCTTTGAATCAAAGGCAGAAAATGGTTTTGCAAAGGAAGACAGAAGAAGCTGCTCAGGCAGCAAAGAGGCTAAAGGACCTTTTGGAAACCCGAAAGGCTTCACGTGAAACTTTCAGTGCTGGAATGGGCAATGGTCCTAGCACTCAGGTTCTAATGCAGGTGATTGAGCATGAGCTTGAAGTCTTAGTAAGGGTACATGAAGTGCGGGCTGAATATGAGCGTCAAATTGAGGAGAGAGCAAGAATGGCCAAGGAGGTTGCTAGGTTGAAGAAAGAATCAGAACTGAACAGAGAAACTAACTTAAGTGACTGTTCACAATCAATGTCTCCCGGAGCAAGAAATTCAAGGATTTTTGCACTTGAAAATATGCTTTCTACTTCATCTAGTACTGTCGTTTCAATGGCATCACAGTTATCAGAAGCAGAAGAGCAGCGTGAGCGGGCTTTCAGTGGCAGAGGACGTTGGAATCAAATACGTTCCGTTGCTGAGGCAAAAAATATAATGAATTTCTTGTTCAATCTAGCAGCCTCTTCCAGGTGTTCTTTAAGGGACATTGAAGTTATATGTAGAGAGAAAGATTCTGAAATAAGAGACTTGAAGCAAAAAATAGTGAACCTCAATGGTTCACTTCGAAAATTGGAAATGCAGAAAGCAGAACTTTTTCACCAGAATATGGCCTTGAAAAAAGATTCCATGGAAAGAGCAGCAGATTCTTTCGCCATCGGGGGACACAACTATGACTTAAGAAAGCAGGAAAACCGGACCTCCTTTCTCTTAATAGAGGATATGGACACATCGGAATCAGAACATTCAAACGTGGATGCTTCTGATGATGATGATTGGGTAATGGATGAGACGAATGATGACTTGGCGAACCCTAGGAAGCGACTGCATGAAAGGAAAAGAAACTCAAAATCTCGTACACGTTCACAAGTTCTTTCTGATACCAATAATTCCGTAGATTTAAAGTCAGATAGTTCAAGCGAAGGAAGAAATGTTGCTTTGAATGAGAATCCTTTTCCATTATCAGATGTTTGCTGCTCTTGCAGTAAGTCTTCTTCCTGCAAGACAATGAAATGCCAGTGTAGAGCCAGAGGCGGAGCTTGTGGTTCTTCATGTTGCTGCATAGCATCCAAGTGTGCAAATAGAGGTCCGAAAAGTGACCTAGATGGTTCATCAAAACCTGACGCCTTCCAAGGTATAGAAGGTTCAAATGAAACAGACAAGGATCAAGCTCTTCTTGCTTCTCAGGGTGCAATGCTACTTCAAAGTGCACTTGTTGACAAGCCAAATGAGACAAATGATGATGCGGTCCCAAGGAGAAGGCCATTATCTGACATTGGAAACTCATTGGTCAAGTCAAATGCACCAAAGGCTAATCAGAGAAAGAAGTGGAGGAAATCTACTATTCAGCTCATCCCCAACCCTCCTCCACCTCTACCTCCACCACAAGTGGAAATTACGGAATCTGGCACAAATAAGGTGGAGAACAGCACCCAAGAAGTCAACATTCCGTTGAAGTTGCCAAGGGCTATGAGATCAGCAGCATCTAATGGTGGCGGTAATAATAACAACATGCTTCGGGAGAGAAATGCTGATCAGTCAGATGAATCTGTTGGAAATAACAATAAGGATTCTGTGCTTATTATTCCAGGAAGTCCTGGAAGACAAAGGAGAAAACCGGACGAGAAAGAGAACTGTGGCCATTAA 3918 42.24 MENAETRPADSSQCVRVAVNIRPLITSELMLGCTDCITVVPGEPQIQIGSHSFTYDHVYGATGSLSSTIYDDCVGPLVDVLFHGYNATVLAYGQTGSGKTYTMGTNYAGEGSDGIIPKVMESIFKKVENIKTSTEFLIRVSFIEIFKEDVFDLLEQNSSGLAKGEGIPPGKPAAPARVPIQIRETASGGITLAGVTEAEVRTVEEMASYLLRGSLARATASTNMNSQSSRSHAIFTITVEQKRISNCHAVATHDDLSGDDILCAKLHLVDLAGSERAKRTGADGMRLKEGIHINKGLLALGNVISALGDEKKRKEGGFVPYRDSKLTRLLQDSLGGNSKTVMIACVSPADTNAEETLNTLKYANRARNIQNKAVVNRDPAAAHIQRMRSQIEQLQSELLFYRTDAGSPFEEVQILKHKVSLLEASNAELQRELQERRVVCEHLSKCAIDSQVEKDKLVMKIEMARNGKSWDEIDSGSSQDSDLVKTYVSKIQELESELLHLRNFANSKHNLFVECHDSYEDRPHSNGALFPCANEYSSDYHSVGVVDISDEIEDQEKELEHSSLQEKLDMELKELDKRLEQKEAEMKRFAGVDTTVLKHHYEKKVHELEKEKKVLQKEIEDLRHNLSNISSTSDDGAQKLKEDYLQKLNVLEAQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDDIQRIKSQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLKALNQRQKMVLQRKTEEAAQAAKRLKDLLETRKASRETFSAGMGNGPSTQVLMQVIEHELEVLVRVHEVRAEYERQIEERARMAKEVARLKKESELNRETNLSDCSQSMSPGARNSRIFALENMLSTSSSTVVSMASQLSEAEEQRERAFSGRGRWNQIRSVAEAKNIMNFLFNLAASSRCSLRDIEVICREKDSEIRDLKQKIVNLNGSLRKLEMQKAELFHQNMALKKDSMERAADSFAIGGHNYDLRKQENRTSFLLIEDMDTSESEHSNVDASDDDDWVMDETNDDLANPRKRLHERKRNSKSRTRSQVLSDTNNSVDLKSDSSSEGRNVALNENPFPLSDVCCSCSKSSSCKTMKCQCRARGGACGSSCCCIASKCANRGPKSDLDGSSKPDAFQGIEGSNETDKDQALLASQGAMLLQSALVDKPNETNDDAVPRRRPLSDIGNSLVKSNAPKANQRKKWRKSTIQLIPNPPPPLPPPQVEITESGTNKVENSTQEVNIPLKLPRAMRSAASNGGGNNNNMLRERNADQSDESVGNNNKDSVLIIPGSPGRQRRKPDEKENCGH 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10705010 10713151 - Conep04aG0134300.1 Cone4ag1297 436275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1297 1305 PRINTS Kinesin heavy chain signature 319 340 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 PRINTS Kinesin heavy chain signature 265 283 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 PRINTS Kinesin heavy chain signature 222 239 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 MobiDBLite consensus disorder prediction 1167 1199 - -
Cone4ag1297 1305 Pfam Kinesin motor domain 47 369 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 ProSiteProfiles Kinesin motor domain profile. 14 369 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 MobiDBLite consensus disorder prediction 1245 1305 - -
Cone4ag1297 1305 Coils Coil 412 432 - -
Cone4ag1297 1305 Coils Coil 545 592 - -
Cone4ag1297 1305 Coils Coil 746 766 - -
Cone4ag1297 1305 Coils Coil 801 828 - -
Cone4ag1297 1305 Coils Coil 384 404 - -
Cone4ag1297 1305 Coils Coil 641 706 - -
Cone4ag1297 1305 Coils Coil 598 632 - -
Cone4ag1297 1305 FunFam kinesin-like protein KIN-4A isoform X1 8 397 - -
Cone4ag1297 1305 SMART kinesin_4 12 377 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1297 1305 Coils Coil 918 966 - -
Cone4ag1297 1305 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 9 1274 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Cone4ag1297 1305 MobiDBLite consensus disorder prediction 1045 1070 - -
Cone4ag1297 1305 Gene3D Kinesin motor domain 9 405 IPR036961 -
Cone4ag1297 1305 MobiDBLite consensus disorder prediction 1120 1142 - -
Cone4ag1297 1305 MobiDBLite consensus disorder prediction 1004 1071 - -
Cone4ag1297 1305 ProSitePatterns Kinesin motor domain signature. 264 275 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone4ag1297 1305 CDD KISc_KIF4 14 370 - -
Cone4ag1297 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 404 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1297 Cone-Chr4:10705010 Cone4ag1592 Cone-Chr4:12148739 7.04E-283 dispersed
Cone20ag0552 Cone-Chr20:3068552 Cone4ag1297 Cone-Chr4:10705010 4.11E-11 transposed
Cone14ag0161 Cone-Chr14:775053 Cone4ag1297 Cone-Chr4:10705010 9.92E-25 wgd
Cone4ag1297 Cone-Chr4:10705010 Cone5ag0528 Cone-Chr5:2229238 1.09E-41 wgd
Cone4ag1297 Cone-Chr4:10705010 Cone7ag0858 Cone-Chr7:6570791 0 wgd
Cone4ag1297 Cone-Chr4:10705010 Cone8ag0202 Cone-Chr8:1062345 4.59E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32