Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1298 ATGGTGAGGGAGAAGATAAAGATAAAGAAGATAGACAACATAACAGCAAGACAAGTGACCTTCTCTAAAAGGAGAAGAGGTCTGTTTAAGAAAGCCGAGGAGCTTTCTGTTCTTTGCGATGCTGAAGTTGCTCTTATCATCTTCTCTAACACCGGAAAGCTCTCTGAATTTTCCAGCAGCAGCAGTATGAGCAACGTACTTGCAAGGTACTATCTCCACTTAAGTACCAACTCCAAATCGGACCAACCATCTCTTGAGCTCCAACTGGATAATAGCAATCATGTCAGATTGAGCGAAGAAATATCAGAAAAGAGCCGCCAGTTAAGGCAGATGAAAGGAGAGGATCTTCAAGGATTAAATATAGAGGAACTGCAGAATTTGGAGAAGATGCTTGAATCTGGACTTAGCCGCGTACTCTCTATTAAGGATGACCGTATAATGAGTGAGATCTCTGCCCTTGAGGTTAAGGGAGCTGAGTTGATAGAAGTGAATAAGAGACTGAAAGAGAAGATGTTGACATTGTCTAGATCGGGAAGAATGAAGGTTGTGACCGAGCAAGTGCAGCCCGATGCCGGAAATAATGAAGAGGGGGTGTCGTCGGATCAGTCGGCAGTACTCAATGCCTGTAGTTGCAGTAGTTCATGCCCCCCTCATGTCGAGGATGATTGCTCTGATACAATCTCTCTCAGATTAGGGCTTCCCTTTTCCAACTGA 714 44.26 MVREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSNTGKLSEFSSSSSMSNVLARYYLHLSTNSKSDQPSLELQLDNSNHVRLSEEISEKSRQLRQMKGEDLQGLNIEELQNLEKMLESGLSRVLSIKDDRIMSEISALEVKGAELIEVNKRLKEKMLTLSRSGRMKVVTEQVQPDAGNNEEGVSSDQSAVLNACSCSSSCPPHVEDDCSDTISLRLGLPFSN 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10714434 10717904 - Conep04aG0134400.1 Cone4ag1298 436276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1298 237 Coils Coil 94 114 - -
Cone4ag1298 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1298 237 Pfam K-box region 91 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone4ag1298 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 Coils Coil 150 170 - -
Cone4ag1298 237 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 FunFam Transcription factor, MADS-box 13 84 - -
Cone4ag1298 237 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone4ag1298 237 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone4ag1298 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1298 Cone-Chr4:10714434 Cone6ag0933 Cone-Chr6:4798470 7.53E-25 dispersed
Cone12ag0994 Cone-Chr12:8469668 Cone4ag1298 Cone-Chr4:10714434 8.96E-40 wgd
Cone17ag1176 Cone-Chr17:8627228 Cone4ag1298 Cone-Chr4:10714434 1.53E-72 wgd
Cone20ag0555 Cone-Chr20:3087265 Cone4ag1298 Cone-Chr4:10714434 1.25E-76 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone6ag1530 Cone-Chr6:12035959 1.28E-59 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone7ag0856 Cone-Chr7:6546748 1.02E-121 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone8ag1021 Cone-Chr8:9485806 5.07E-43 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone9ag1445 Cone-Chr9:10720623 5.72E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45996 PF01399 PCI 3.00E-09 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1298 - - - 0.0