Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1300 ATGTTCCCAAAGTTCCATCCCCACCACCATCACCACAACCCATTTTCCATAACCCCTCAAGTAGGAGGTGGCGACGGCGACGGCGACGGGGTGAGTCCCATCTTGAGCCAGAAACAGCCCAAACAGTCAGCTGAGCCCAATTCCAGAGACGGAGCCAGCATCGAGGTTTCTAGGCGCCCACGTGGCCGCCCACCGGGCTCAAAAAACAAGCCCAAATCACCCATCATCTTAACGGCTCACGAGCCGGAGCCTCCCCCTCTGAGGCCATATGTCATCGAGGTCTGTGCAGGAAACGACGTCGTCAAGTCCGTCGCTCACTTCTGTCGCCGCAAAAACTTTGCACTGTGTGTCCTAACCGGCTCCGGAACGGTCGCTAACGTCAGTCTCCGACAACCCTCCGCAACTCCCAGAGCGACGGTTACCTTCCACGGACGCTTCGAAATCCTCTCTCTAAACGCTACGTTTTTTCCCCAAACGCCGTCGTATCCAACAGTACTCCCTAACAGCTTCACCATCTCTCTGGCGGGCCCTCAGGGCCAGATCGTCGGCGGTCTAGTCACCGGATCTTTGATCGCAGCTGGAACTGTTTACTTGATCGCTGCCTCGTTCAATAACCCTTCTTATCACCGCCTACCTCCAGACGAGGAGGTCCAGAAGTCGGAATCGGGATGCTACAGCGGAGGCGGTGGCGCTGAGGGTCAGTCTCTACCGGCTACCGGCGCAGAAGAAGGTCAAGGTTCAGAGTTGTACGGTTGTCATGCACCGTCGGATGTAATATGGGCTCCGACGGCGAGACAACCACCACCTCCTCCTCCTCCTCCTCCTCACCATTACTGA 837 57.11 MFPKFHPHHHHHNPFSITPQVGGGDGDGDGVSPILSQKQPKQSAEPNSRDGASIEVSRRPRGRPPGSKNKPKSPIILTAHEPEPPPLRPYVIEVCAGNDVVKSVAHFCRRKNFALCVLTGSGTVANVSLRQPSATPRATVTFHGRFEILSLNATFFPQTPSYPTVLPNSFTISLAGPQGQIVGGLVTGSLIAAGTVYLIAASFNNPSYHRLPPDEEVQKSESGCYSGGGGAEGQSLPATGAEEGQGSELYGCHAPSDVIWAPTARQPPPPPPPPPHHY 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10726530 10727473 - Conep04aG0134600.1 Cone4ag1300 436278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1300 278 MobiDBLite consensus disorder prediction 262 278 - -
Cone4ag1300 278 CDD DUF296 88 203 IPR005175 -
Cone4ag1300 278 MobiDBLite consensus disorder prediction 35 50 - -
Cone4ag1300 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 244 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone4ag1300 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 204 IPR005175 -
Cone4ag1300 278 Gene3D - 87 223 - -
Cone4ag1300 278 ProSiteProfiles PPC domain profile profile. 84 224 IPR005175 -
Cone4ag1300 278 FunFam AT-hook motif nuclear-localized protein 88 222 - -
Cone4ag1300 278 MobiDBLite consensus disorder prediction 210 278 - -
Cone4ag1300 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
Cone4ag1300 278 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0558 Cone-Chr20:3120524 Cone4ag1300 Cone-Chr4:10726530 4.00E-89 dispersed
Cone4ag1300 Cone-Chr4:10726530 Cone7ag0452 Cone-Chr7:2047086 4.20E-48 dispersed
Cone14ag0141 Cone-Chr14:683830 Cone4ag1300 Cone-Chr4:10726530 4.86E-45 wgd
Cone17ag1172 Cone-Chr17:8610336 Cone4ag1300 Cone-Chr4:10726530 3.25E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1300 - - - 0.0