Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1303 ATGCCGACACGAAATGCAGAACGGTCTCAGTCTCAGGGAGATGGAAATTCGATTCCTCCTCCTCCTCCACTACCTCCTCCTCCTACAGCAGATCCTAAAGATGGTCCGCCTGAGCAGCAATCCCGTGGTGGCAATGCGAATGTTGTTCCTCAAAAGGGGAGTGAGGTGAATCTAACACTCGGTGGTATTGACCTCAACAGTTCAGGAAGTGTTGTTGTGAAAGCAGATAAAAAGCTCTTAACCGTGCGCTTTCCTGATGGCCGTGAAGGACGGGCCTTCACACTTAAGGCGGAAACATTAGAGGATCTAAATGAGTGGAAGGCTGCGCTAGAGATTGCTTTGGCACAAGCACCAGATGCTGGTCATGCCCTGGGGCAAAATGGCATTCTCAAGAATGATCAATCTGATCCAGTTGAGGCAACTTCGGAGCAGCCGAAGGAAAAGCAACCTCTAAAATCTATAGTTCTTGGTCGGCCCATTCTGCTTGCTCTGGAAGATGTTGACGGGACTCCGTCTTTTCTGGAAAAAGCCCTAAGATTCCTCGAAGAGCAAGGAATCAAAGTAGAAGGCATCTTGCGACAAGCTGCAGATGTTGATGATGTTGAACGTCGAGTACGGGATTATGAGCAGGGAAAAACTGATTTTTCTCCAGACGAGGATGCACATATTGTTGGTGATTGTGTCAAGTATGTGCTTCGGGAGTTGCCATCATCTCCGGTCCCTGCATCTTGCTGTAACGCACTACTAGAAGCATGCCGAACTGATCACAGTGTTAGACTCAATGCTATGCAAACGGCAATATTGGAAACATTCCCAGAACCAAATCGTCGCTTACTACAGAGGATACTTATGATGATGCAAACTGTGGCTTCTCATAAGGAGAAGAATCGCATGAGCTCCTCAGCAGTGGCAGCTTGCATGGCACCTTTGCTTCTCCGTCCCCTTTTGGCTGGAGATTGTGAAATTGAAACCGATTTCAATGTAGGCGGTGATGGTTCACTTCAACTTCTGAAGGCTGCTGCAGCAGCTAACCATGCTCAAGCCATCGTTATAACCTTATTGGAGGAGTATAATACTATTTTTGGGGAAGGTCCTGTTTCTGCTGACATATACGCTGACACAGAAGAGAGTGGAAGTGAGGATGAAGATGGTTATGATGACGACATGTCTTATGAAGATGAGGAGGAAGATGGTGTCACGGGTTCTGAAGCATACACTGATGAAGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGATGAAGAAGAGGATGGGATATCAGAAACTGGCAGTGATACTGCAGACTCTAAAGATAATGACAAGGAATATGATGGTTTGGGCTCTAGTCTGGAATCTCCTAAAGGACTTGGGGAAAATAAAGGCAATCAGGAGCTTGCATCAATTTCACTTCCTACTTCATGGAAAAGCAATAATAGTGCTCTGGATCAGGGAAAAGATAGCCTCAGAATGCAGCCTATTAATGAGTCAGCTGAATCACTAGGAGACGCAGCAACAGAAGAAAGTCTGATTGAGAAACTATCTGACCATACTCCGGTTGGTAGTATGAAACACTCGTCAACCATGTCCAATGGATCCAGGGCATTCAGGCGAGCTGCTGGTTGGGGACGCACTTCTGCAAGGAAGAACCTTTCTATGGAGTTCATTGATTTGCCAATTGAAGAAGAGGATGAGATCCAGAAACTTGAGTCTACAAAACATGAATTGGAAAACAGAATCCTAGCGGAGGTTAAAGAAAATGAAATCCTTCAATCAGATGTGGAGGCAAAAAAGAGAGCCTTATGGGAGCATCGCGCGGCTCTCGAGCAAGATGTAGCAAGATTGCAGGAAGAGTTGCAAAAGGCAAAGGACTTGAGGATAGCTCTTGAATCTATTGTTAAAGGAACTCATGGTCACTTACCCACCTTAGATAATATTGATGAAAAGACAAGGGGAGAGCTTGAAGAAATAGCTTTAGTGGAATCAGACATTATTAGTTTGAACCAAAAGGTGAATGATCTCGGATTGCAGCTTGATCAACAACGTGAACGGAATGAAGCTTTTGGTCATCAAGCTAAAGGGAAGGACAAACGAAAGAGTGCTGATGTTACATCTCTTACACCTCTTGAAACAAAGCCGGAATCGACATCTCCTCCAGATAATCCTTCAGTTGCAGATTCAGCACAAGTCAAGCCTACTGCTCCAACCAATTCCAAGAGAAGTGGTTCCAAGGGTGAGGGCATGAATTCTACGACTTCTGCATTAACAAAGCTGACTAATAGACTAAACTTCTTGAAAGAGAGGCGAAGCCAGATAACGAATGAACTCCAAAACATTGACAAAGATAGAGGCTTGGGTAATTCCAGTCAAAGCCAAGGGAAACATGATGAGGCTACTACTAAATTGCAAGGATCTGAATCTGATTCGATTCAAAACCCGGAAAGGGACACTGAGAAGGATCATTGCCAGTTTCCCCGCATCCAAGAGAATGTCTTAGGAAAAACTGCAGGAAGGAAATCAGAAGAAGGCCAAGGAACCTTACATAGCTTGGACAGAGGAAAATTCGAGAGTCATGCTGCAAGCCTTGTTGCTGAAGAAGGTAAAGGAGGTAAGAGCCAATCTTCAGCTATTTCGAGGAACACTTCTAGATGA 2661 44.72 MPTRNAERSQSQGDGNSIPPPPPLPPPPTADPKDGPPEQQSRGGNANVVPQKGSEVNLTLGGIDLNSSGSVVVKADKKLLTVRFPDGREGRAFTLKAETLEDLNEWKAALEIALAQAPDAGHALGQNGILKNDQSDPVEATSEQPKEKQPLKSIVLGRPILLALEDVDGTPSFLEKALRFLEEQGIKVEGILRQAADVDDVERRVRDYEQGKTDFSPDEDAHIVGDCVKYVLRELPSSPVPASCCNALLEACRTDHSVRLNAMQTAILETFPEPNRRLLQRILMMMQTVASHKEKNRMSSSAVAACMAPLLLRPLLAGDCEIETDFNVGGDGSLQLLKAAAAANHAQAIVITLLEEYNTIFGEGPVSADIYADTEESGSEDEDGYDDDMSYEDEEEDGVTGSEAYTDEEDDDDDDDDDDDDDEDEEEDGISETGSDTADSKDNDKEYDGLGSSLESPKGLGENKGNQELASISLPTSWKSNNSALDQGKDSLRMQPINESAESLGDAATEESLIEKLSDHTPVGSMKHSSTMSNGSRAFRRAAGWGRTSARKNLSMEFIDLPIEEEDEIQKLESTKHELENRILAEVKENEILQSDVEAKKRALWEHRAALEQDVARLQEELQKAKDLRIALESIVKGTHGHLPTLDNIDEKTRGELEEIALVESDIISLNQKVNDLGLQLDQQRERNEAFGHQAKGKDKRKSADVTSLTPLETKPESTSPPDNPSVADSAQVKPTAPTNSKRSGSKGEGMNSTTSALTKLTNRLNFLKERRSQITNELQNIDKDRGLGNSSQSQGKHDEATTKLQGSESDSIQNPERDTEKDHCQFPRIQENVLGKTAGRKSEEGQGTLHSLDRGKFESHAASLVAEEGKGGKSQSSAISRNTSR 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10738741 10745688 - Conep04aG0134900.1 Cone4ag1303 436281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1303 886 MobiDBLite consensus disorder prediction 707 758 - -
Cone4ag1303 886 ProSiteProfiles PH domain profile. 1 115 IPR001849 -
Cone4ag1303 886 SUPERFAMILY PH domain-like 60 120 - -
Cone4ag1303 886 Coils Coil 608 635 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 125 149 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 689 758 - -
Cone4ag1303 886 Gene3D Rho GTPase activation protein 139 362 IPR008936 -
Cone4ag1303 886 Pfam RhoGAP domain 171 314 IPR000198 GO:0007165(InterPro)
Cone4ag1303 886 Coils Coil 667 687 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 368 508 - -
Cone4ag1303 886 CDD RhoGAP 171 307 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 847 864 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 1 15 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 778 886 - -
Cone4ag1303 886 SUPERFAMILY GTPase activation domain, GAP 170 363 IPR008936 -
Cone4ag1303 886 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 46 801 IPR052799 -
Cone4ag1303 886 Coils Coil 569 596 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 689 706 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 778 813 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 518 537 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 374 433 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 434 451 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 466 498 - -
Cone4ag1303 886 ProSiteProfiles Rho GTPase-activating proteins domain profile. 162 361 IPR000198 GO:0007165(InterPro)
Cone4ag1303 886 MobiDBLite consensus disorder prediction 523 537 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 1 51 - -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 814 828 - -
Cone4ag1303 886 Pfam Leucine-zipper of ternary complex factor MIP1 606 684 IPR025757 -
Cone4ag1303 886 MobiDBLite consensus disorder prediction 16 34 - -
Cone4ag1303 886 SMART RhoGAP_3 168 358 IPR000198 GO:0007165(InterPro)
Cone4ag1303 886 Coils Coil 751 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1532 Cone-Chr11:10733602 Cone4ag1303 Cone-Chr4:10738741 2.64E-176 dispersed
Cone18ag0065 Cone-Chr18:352480 Cone4ag1303 Cone-Chr4:10738741 1.45E-178 dispersed
Cone4ag1303 Cone-Chr4:10738741 Cone7ag0851 Cone-Chr7:6487547 8.30E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47