Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1308 | ATGGCTCCCAGTTTAGACTGTGCGTTTTCAAGCCTTTTATGCGCTGAAGAGAACGACGCCGTTTTCGACGATACTAACAACAACGAAGATTATCGGAGAGTAGTAGCGGAGCTTGAGGAGGAAGGAAGATACCAGAGAAATCTGCGTCATCCTGACCGTCGATTTGGTGTTGATAAGGAGGAAGATGATGATTTATCATTGCCGTTGCTTAGTGATGAATGTGTGGCTTTAATGGTAGAGATCGAATCCCAGCACATGCCTGATTCTAATTACTTGGACAGATTGAGAAATGGAGACTTGAACCTTGCAGCTAGAAAAGAGGCCGTTGATTGGATTTCTAAGGTCAAAGATCATTTTAGCTTTGGGCCTCTCTGTGCCTACTTGGCCATAAGCTACTTGGATCGATTCTTTTCGACCTATGAACTACCCAAAGGCAAAGCTTGGACAATGCAATTATTGGCAGTGGCTTGTTTATCTCTTGCAGCCAAATTGGAGGAAACTCAAGTCCCACTCACGCTCGATTTGCAGGTGGCTGATTCGAAATTTGTGTTTGAAGCTCGGACTATAGAAAGAATGGAGCTTCTGGTTTTGAGCACATTGAGGTGGAGAATGCAAGCAATTACTCCTTTCTCCTTCATAGATAGTTTCATTTGCAAGATTAACAGCAATCAAATCCTGCCTCGAGTTTCCATTTCGCAATCGATTCAACTAATCTTATGCATAATACAAGGAATTGACTTCTTGGAGTTCAGACCATCAGTGATTGCAGCAGCAGTGGCAATCTCTGTTATGGGAGAGACCACAATGCTGGACTTTGAGAAAGCATTTTCTCTTCTCCCTCAACATATCGAAAAGGAGAGAGTGCTAAAATGTATTAAATTGATTCAAGACTCTTCACTAATCAATAACTCCGTAAAGAATGCAAGAGCTTCAATCCCATCCATGCCTCATAGTCCTAGCCGGGTGTTAGATCTTGCATGCTTAAGCTACAAAAGCGACGACAAAACAACCGGTTCTTGTGTAAATTCTACTCATAATAGTAGCAATAATAGCCCACAGCCTAGTACCAAAAGGAGGCTTAAACGACCCTGGGAAGTCGAACTATAG | 1107 | 42.55 | MAPSLDCAFSSLLCAEENDAVFDDTNNNEDYRRVVAELEEEGRYQRNLRHPDRRFGVDKEEDDDLSLPLLSDECVALMVEIESQHMPDSNYLDRLRNGDLNLAARKEAVDWISKVKDHFSFGPLCAYLAISYLDRFFSTYELPKGKAWTMQLLAVACLSLAAKLEETQVPLTLDLQVADSKFVFEARTIERMELLVLSTLRWRMQAITPFSFIDSFICKINSNQILPRVSISQSIQLILCIIQGIDFLEFRPSVIAAAVAISVMGETTMLDFEKAFSLLPQHIEKERVLKCIKLIQDSSLINNSVKNARASIPSMPHSPSRVLDLACLSYKSDDKTTGSCVNSTHNSSNNSPQPSTKRRLKRPWEVEL | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 10767744 | 10770488 | + | Conep04aG0135400.1 | Cone4ag1308 | 436286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1308 | 368 | CDD | CYCLIN_AtCycD-like_rpt1 | 104 | 202 | - | - | |
| Cone4ag1308 | 368 | FunFam | D6-type cyclin | 202 | 293 | - | - | |
| Cone4ag1308 | 368 | SMART | Cyclin_C_2 | 207 | 318 | IPR004367 | - | |
| Cone4ag1308 | 368 | Pfam | Cyclin, C-terminal domain | 207 | 306 | IPR004367 | - | |
| Cone4ag1308 | 368 | Pfam | Cyclin, N-terminal domain | 75 | 204 | IPR006671 | - | |
| Cone4ag1308 | 368 | CDD | CYCLIN_AtCycD-like_rpt2 | 207 | 295 | - | - | |
| Cone4ag1308 | 368 | SMART | cyclin_7 | 110 | 198 | IPR013763 | - | |
| Cone4ag1308 | 368 | MobiDBLite | consensus disorder prediction | 338 | 368 | - | - | |
| Cone4ag1308 | 368 | Gene3D | - | 88 | 205 | - | - | |
| Cone4ag1308 | 368 | SUPERFAMILY | Cyclin-like | 190 | 300 | IPR036915 | - | |
| Cone4ag1308 | 368 | Gene3D | - | 78 | 292 | - | - | |
| Cone4ag1308 | 368 | PANTHER | CYCLINS | 62 | 297 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
| Cone4ag1308 | 368 | SUPERFAMILY | Cyclin-like | 63 | 204 | IPR036915 | - | |
| Cone4ag1308 | 368 | FunFam | D2/4-type cyclin | 88 | 201 | - | - | |
| Cone4ag1308 | 368 | MobiDBLite | consensus disorder prediction | 338 | 357 | - | - | |
| Cone4ag1308 | 368 | ProSitePatterns | Cyclins signature. | 105 | 136 | IPR048258 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag1037 | Cone-Chr3:29188468 | Cone4ag1308 | Cone-Chr4:10767744 | 2.72E-51 | dispersed | |
| Cone3ag1375 | Cone-Chr3:32742463 | Cone4ag1308 | Cone-Chr4:10767744 | 2.13E-39 | dispersed | |
| Cone4ag1308 | Cone-Chr4:10767744 | Cone7ag1351 | Cone-Chr7:9821020 | 5.90E-44 | dispersed | |
| Cone9ag0381 | Cone-Chr9:1732722 | Cone4ag1308 | Cone-Chr4:10767744 | 3.13E-07 | dispersed | |
| Cone10ag0325 | Cone-Chr10:1532544 | Cone4ag1308 | Cone-Chr4:10767744 | 1.53E-26 | transposed | |
| Cone17ag1189 | Cone-Chr17:8708758 | Cone4ag1308 | Cone-Chr4:10767744 | 4.44E-125 | wgd | |
| Cone20ag0545 | Cone-Chr20:3036345 | Cone4ag1308 | Cone-Chr4:10767744 | 1.90E-124 | wgd | |
| Cone4ag1308 | Cone-Chr4:10767744 | Cone6ag1538 | Cone-Chr6:12087182 | 1.02E-93 | wgd | |
| Cone4ag1308 | Cone-Chr4:10767744 | Cone7ag0848 | Cone-Chr7:6444069 | 3.31E-227 | wgd | |
| Cone4ag1308 | Cone-Chr4:10767744 | Cone9ag1454 | Cone-Chr9:10785867 | 1.06E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1308 | K18810 | - | rcu:8268388 | 411.764 |