Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1309 ATGGAGGATTTCGGTTTTCATGATGGTAACGTCTACGATTTGATCGACAGCAAGCGTATCCACTCTCGTCAAGATGTCAACCATAGTTTGCAGATGCATTCATCCTTGATCCGAAGGCTCTCCCAGGAGAAAGAACTGGAGGGGCATCAAGGTTGCGTCAATGCGGTGGCATGGAATTCAGAAGGTTCGCTTTTGATCTCTGGATCAGATGACACACGGATCAATATCTGGAGCTATTCAGGTCGAAAACTTTTGCACTCCATAGATACTGGGCATTCAGCTAACATATTCTGTACAAAATTTGTGCCCGAGACTTCTAACGAGGTCGTGGCCTCCGGAGCTGGGGATGCAGAAGTTCGGTTATTTAACTTATCTCGCTGTGGCAGTGGAGGAGTTGATGATAATGCTATTCCTCCATCAGCATTGTATCAGTGTCACACTAAACGAGTAAAAAAATTAGCCGTTGAACAAGGAAATCCCCATGTGGTATGGAGTGCTAGTGAAGATGGGACTCTCAGACAACATGACTTTCGAGAGGGCTGTAGTTGTCCTCCAGCTGGATCCTCTCACCAAGAATGCCACAATGTTCTCCTTGACTTGCGTTGTGGAGCAAAGAGATCACTTGCTGATTCTCCTAAACAAACTCTTGCTCTAAAATCTTGTGATATCAGTTCCACTAGGCCTCATTTGCTCCTGGTTGGTGGAAGTGATGCATTTGCACGATTATACGATAGAAGGATGTTGCCACCCCCATCCTTTAGTCAGAAAAGGATGTCACCACCACCATGCGTTAACTATTTTTGTCCAATGCATCTTTCTGATCGAGGACGTCCAAGTTTGCATTTGACGCATGTTACCTTTAGTCCTAATGGTGAAGAGGTTCTCCTTAGCTATAGTGGAGAACATGTCTATTTGATGAACTTAAACCATGCAGGTGAGAATGCCATGCGGTACACTTCAGGAGATGTTTCCAAGATAATGAGTTTCACCCCTGTATTAAATGGGGTGGAACTGATGCATCCTGTGTCCAACATTTTCCATAATCATCTTCCTCCGAAAAAGAAAAATATTACTGCCACTCTTGACAAGTGCAGAAAGTTATTACAACTTGCTGAAAAGTGCTTAGAGGACGGAAGAGAATACTTCTGCGGGATCGAGGCATGCAATGAGATTTTGGATGTATATGGTCGTTACATAGGGCCTACATTGAAGCATGCTTCATTATGTGCACGTGCTGCATTGTTTCTTAAGCGGAAGTGGAAAAATGATGCTCCTATGGCCATCCGAGATTGTTACACTGCCCGTCGAATCGATAGTTCCTCTTTTAAAGCTCATTACTACATGTCTGAGGCGTTATCTCTGTTGGGTAAACATAAAGAGGCCCTGGACTTTGCATTTGCAGCTCAATGTCTAGCTCCATCTAATCCTGAAGTGGCTGAAAGAGTGGATAGTGTGAAAAGAGATATTGCTGCAGCTGAAGCTGAAAAGTCTAACAAGGCAAACGATGGAGCTCTAAGGTCTGAACCTCCAGGTGGAAGGGTATTATCATTAAGTGATATTCTCTACCGCTCGGATGCAAATAGTGATGCTTCACAAGATGGTCCACAATCGGAGAGAGAATATTCTGATTATGAGGAGGAACTGGAATTGGACTTTGAAACATCTATATCAGGTGATGAAGGGGTTGAATCTAGTATTTTACAGGGAAATCTCAGAATCCAACGAAGAGGTGTTCCAGCTACAGAAAGCAGTGGCGCCAATGGCTCATGTGGATCGCCTTCATCATCATCACAGAATGACAGGACATCTTATCAGCCGAAGCCTGTCATTGATATGAAGCAGAGATACGTTGGCCATTGCAATGTTGGAACTGACATAAAGCAGGCCAGCTTTCTTGGTCAAAGAGGTGAGTATGTGGCTAGTGGAAGTGATGATGGCAGATGGTTTATATGGGAGAAGCAAACGGGCAGATTAATCAAAATGCTTGTTGGAGATAGTGCTGTTGTGAATTGTGTCCAATGCCACCCTGTTGACTGTGCTATCGCTACTAGTGGGATTGATAATACTATAAAGATGTGGACTCCTAGTGCTTCTGAGCCATCAATTGTTGCTGGTGGAGCTGTAGGGCCAGAGGCAGCTGATGTATTGGCTGCCATGGAAAACAATCAACATAGATTATGCCGTAACCGTGAAGCTGTGCTGCCATTTGAGCTTCTGGAGCGTTTTAGAATGCATGAGTTCGCAGAGGGAAGCCTGCATCCATTCGAGTGTGCTCAGAGTTGA 2283 44.46 MEDFGFHDGNVYDLIDSKRIHSRQDVNHSLQMHSSLIRRLSQEKELEGHQGCVNAVAWNSEGSLLISGSDDTRINIWSYSGRKLLHSIDTGHSANIFCTKFVPETSNEVVASGAGDAEVRLFNLSRCGSGGVDDNAIPPSALYQCHTKRVKKLAVEQGNPHVVWSASEDGTLRQHDFREGCSCPPAGSSHQECHNVLLDLRCGAKRSLADSPKQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPPSFSQKRMSPPPCVNYFCPMHLSDRGRPSLHLTHVTFSPNGEEVLLSYSGEHVYLMNLNHAGENAMRYTSGDVSKIMSFTPVLNGVELMHPVSNIFHNHLPPKKKNITATLDKCRKLLQLAEKCLEDGREYFCGIEACNEILDVYGRYIGPTLKHASLCARAALFLKRKWKNDAPMAIRDCYTARRIDSSSFKAHYYMSEALSLLGKHKEALDFAFAAQCLAPSNPEVAERVDSVKRDIAAAEAEKSNKANDGALRSEPPGGRVLSLSDILYRSDANSDASQDGPQSEREYSDYEEELELDFETSISGDEGVESSILQGNLRIQRRGVPATESSGANGSCGSPSSSSQNDRTSYQPKPVIDMKQRYVGHCNVGTDIKQASFLGQRGEYVASGSDDGRWFIWEKQTGRLIKMLVGDSAVVNCVQCHPVDCAIATSGIDNTIKMWTPSASEPSIVAGGAVGPEAADVLAAMENNQHRLCRNREAVLPFELLERFRMHEFAEGSLHPFECAQS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10771320 10778814 + Conep04aG0135500.1 Cone4ag1309 436287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1309 760 MobiDBLite consensus disorder prediction 580 605 - -
Cone4ag1309 760 Gene3D Tetratricopeptide repeat domain 352 506 IPR011990 GO:0005515(InterPro)
Cone4ag1309 760 Pfam WD domain, G-beta repeat 617 651 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 Pfam WD domain, G-beta repeat 657 693 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SUPERFAMILY TPR-like 404 479 IPR011990 GO:0005515(InterPro)
Cone4ag1309 760 SUPERFAMILY WD40 repeat-like 39 693 IPR036322 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 136 176 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 655 694 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 39 78 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 605 652 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 81 123 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 SMART WD40_4 204 244 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 9 750 IPR045151 GO:0005737(PANTHER)|GO:0045717(PANTHER)|GO:0080008(PANTHER)
Cone4ag1309 760 FunFam Transducin family protein / WD-40 repeat family protein 564 736 - -
Cone4ag1309 760 MobiDBLite consensus disorder prediction 525 547 - -
Cone4ag1309 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 693 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 Gene3D - 611 744 IPR015943 GO:0005515(InterPro)
Cone4ag1309 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515(InterPro)
Cone4ag1309 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Cone4ag1309 760 Gene3D - 134 330 IPR015943 GO:0005515(InterPro)
Cone4ag1309 760 MobiDBLite consensus disorder prediction 578 605 - -
Cone4ag1309 760 Gene3D - 27 133 IPR015943 GO:0005515(InterPro)
Cone4ag1309 760 Coils Coil 482 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1309 K11807 - - csv:101206836 1183.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1309 Cone-Chr4:10771320 Cone7ag1201 Cone-Chr7:8931547 3.79E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39