Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1314 ATGAGGAGAAAGAGAAAAGGGAGTGAAACCGATGAGGTAGGTTCTAATCTTCCAGGCATCTTGATAGCAATTTGGGATTCTCGATCTTCCAATCTGAAGTCTCATTATTCCTTAGAAGATTACTCAAGGTTAAATAAAAGATGTAGAGAGGGTGCAAGTAATGAACCTGACACTTGCTCTAAGAGTAGGTTTGCCGGAATTGCCACTGCTCCACCATGTGGAACCTCGTCTTCAGTCCCACCCGGAAGAGGAATTAAGAGGAAGATTGGATGTATAGATATGGCTACACAAATGGGTCGGAAGCATAAGATTGAGGAGGATTATGTTCTTGGAGACCCTATTGGCCATGGAAAATTTGGTTCTGTGCGGTTGTGCAAGTCTAGGGGTAGTGGGGCCGAATTTGCCTGTAAGACGTTGAGAAAAGGGGAGGAGACAGTTCATCGAGAGGTAGAAATAATGCAGCATTTATCGGGCCATTCTGGGGTTGTGACATTGAAGGCTGTTTATGAAGAGTTGGAATGTTCTCATCTTGTTATGGAATTGTGTTGTGGGGGACGTTTAATTGACCAGATTGTTAAAGAGTGGCAGTATTCGGAACACTGGGCTGCTAATATTTTTAAGGAGGTTCTGTTGGTTATTAAGTTTTGTCATGATATGGGGGTTGTACATAGAGACATAAAACCAGAGAATATTCTTCTCACAACATCTGGAAAGATCAAGCTTGCTGATTTTGGTCTTGCTATGAGAATTTCAAGTGGTCAGAGTTTAACTGGTTTAGCAGGAAGTCCAGCTTATGTGGCCCCAGAAGTGTTGTTAGGAAAATATTCTGAGAAGGTAGATATTTGGAGTGCAGGTGTCCTCCTACATCTTCTCTTAACCGGACTACTTCCTTTTCAAGGGGAGTCTTTGGAAGCAGTTTTCGAGGCAATCAAGAATGTCACGCTTGATTTCCACGGGGGCCTATGGGAATCTATATCTAAACCGGCTTGCGATCTTATTGGAAGAATGCTGACTAGAGATGTCTCGGCAAGAATAACTGCAGATGAAGTACTAAGGCATCCATGGATATTGTTCTACACAGAGCGGACATTAAAGACACTGCCATTTAAGGGGAAACTGAAGAACCAAATTGGAGATCCTTCTCATAACCCCACACTCTTACTTAGGACTAAATCTGGTATTGTGCGTCCCTTCTCTCGGACTGAGGACAATCCAGATCATCTCTCATTATCTGAAAGTTGCAACACAGAAGATTCAGATGATTGTAGTTTAGTGGTGGACGCACTTGCAACTGCCATATCACAAGTGAGAATCTCCGAGCCGAAAAGAACCAGGCTTTGTGTTCCCACTACCCCAATTGAGCAGCAATGCTCGTCTAACAATCCCTGTAGAGCGTTTTGA 1401 43.25 MRRKRKGSETDEVGSNLPGILIAIWDSRSSNLKSHYSLEDYSRLNKRCREGASNEPDTCSKSRFAGIATAPPCGTSSSVPPGRGIKRKIGCIDMATQMGRKHKIEEDYVLGDPIGHGKFGSVRLCKSRGSGAEFACKTLRKGEETVHREVEIMQHLSGHSGVVTLKAVYEELECSHLVMELCCGGRLIDQIVKEWQYSEHWAANIFKEVLLVIKFCHDMGVVHRDIKPENILLTTSGKIKLADFGLAMRISSGQSLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHLLLTGLLPFQGESLEAVFEAIKNVTLDFHGGLWESISKPACDLIGRMLTRDVSARITADEVLRHPWILFYTERTLKTLPFKGKLKNQIGDPSHNPTLLLRTKSGIVRPFSRTEDNPDHLSLSESCNTEDSDDCSLVVDALATAISQVRISEPKRTRLCVPTTPIEQQCSSNNPCRAF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10801805 10804701 - Conep04aG0136000.1 Cone4ag1314 436292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1314 466 CDD STKc_CAMK 107 355 - -
Cone4ag1314 466 Gene3D Transferase(Phosphotransferase) domain 1 184 383 - -
Cone4ag1314 466 SMART serkin_6 108 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1314 466 Pfam Protein kinase domain 109 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1314 466 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Cone4ag1314 466 SUPERFAMILY Protein kinase-like (PK-like) 105 394 IPR011009 -
Cone4ag1314 466 ProSiteProfiles Protein kinase domain profile. 108 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1314 466 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Cone4ag1314 466 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 367 IPR050205 GO:0004683(PANTHER)|GO:0005516(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009931(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)|GO:0046777(PANTHER)
Cone4ag1314 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1314 466 FunFam Maternal embryonic leucine zipper kinase 100 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1314 Cone-Chr4:10801805 Cone5ag0851 Cone-Chr5:3642056 7.13E-75 dispersed
Cone6ag1712 Cone-Chr6:12918910 Cone4ag1314 Cone-Chr4:10801805 4.23E-14 dispersed
Cone14ag0116 Cone-Chr14:540987 Cone4ag1314 Cone-Chr4:10801805 1.47E-77 wgd
Cone4ag1314 Cone-Chr4:10801805 Cone7ag1257 Cone-Chr7:9337183 9.12e-314 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g473 . Blo12g00717 . Bda03g00469 Bpe02g00129 Bpe04g00431 Bma04g00444 Bma01g02597 . . Cma01g01477 Cma09g00581 Car01g01239 . . Cpe06g00444 . . . . . . . . . . . . . . . Cone4ag1314 Cone7ag1257 . . Lsi04g02263 Csa03g04473 Chy04g00228 . . . Bda11g00784 . . . . . . Cmo01g01533 Cmo09g00568 . . . Car09g00512 . Cpe02g00353 Bhi09g02475 . . . . Mch11g0692 . Cla11g01407 Cam11g1464 Cec11g1492 Cco11g1488 Clacu11g1625 Cmu11g1442 Cre11g1861 . . . Cme04g00254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004556 3 2 1 2 2 0 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82786 PF05834 Lycopene_cycl 2.10E-154 CL0063 Cone PK