Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1315 ATGGGAACTGTCATCAACAGAGACGATGAGGATTTGAACCAACCTCTTATACATGAAGAACCGACAGCAACGCAGAATGATGATTATCACGCACAAGTTCAAGCTGAAGATAAGGATCTCAAACTTTCATCAAGGGTCTGGATCGAAACCCGGAAACTATGGCAAATCGTGGGCCCGGCCATCTTCAGTCGGCTGGCTTCCTTCACTATGAACGTCGTCACTCAAGCCTTCGCCGGTCACCTCGGAGACGTCGAGCTCGCCGCCATCACCATTGCCAACACCGTCATAGTCGGCTTCAATTTCGGCCTACTGTTAGGTATGGCGAGTGCATTAGAGACGTTATGTGGACAGGCGTTTGGGGCGAAACGTTACGAAATGTTGGGAGTATATTTACAGAGGTCGTGGATCGTACTCTTCCTATGTTGCCTCTTGTTACTACCCTTCTACTTCTTCGCAACTCCGCTTCTAAAGCTGATCGGACAGTCCGATGCGGTGGCAGAGGAGTCAGGGGTGGTGGCGTTGTGGCTGATACCACTGCACTTCAGCTTTGCGTTTCAGTTTCCATTGCAGAGGTTCTTACAGAGCCAGCTTAAGAACCCAATTATTGCTTACGTATCATTGGTCGGACTGGTGGTCAACGTGTTTAGCTGTTGGCTTTTCATCTACGTGTTGGACTTTGGTGTGGTGGGTGCAGCGGTGGCTTTGGACATATCATGGTGGCTCAATGGCTTAGGGCTGTACATCTACGTGGTGGGTGGATGGTGTCCTAAGACTTGGTCTGGCTTCTCTCTTCAAGCTTTTTCTGGGCTATGGGAATTCACTAAACTCTCTGCTGCTTCTGGAGTCATGCTTTGCTTGGAGACTTGGTATTACCGGATATTGATATTGCTCACAGGGCACTTACAGAATGCCACTGTCGCGTTAGATGCCTTGTCTATTTGCATGAACATAAATGGGTGGGAGCTGATGATTCCTCTCGCGTTCCTAGCCGCAACCGGGGTCCGGGTAGCAAATGAGCTTGGAGGTGGAAATGGGAAGGCAGCAAAATATGCAGCATTAGTATCGGTTATCCATTCGACTATGATCGGGCTTTTCTTCTTTATACTAATAATCATTCTTCATGACAAGATAGCATATATTTTCACAACCAGCACTGATGTTGTTGAAGCTGTTGATTCACTTTCCCATCTTTTAGCCTTCACCATTCTCTTGAACAGCGTTCAGCCTGTTTTATCAGGGGTTGCGATTGGATCTGGCTGGCAAGCATGGGTTGCGTATATAAATTTGGGCTGCTACTATTTTATTGGGCTCCCGCTTGGCATTTTGATGGGCTGGGTCTTCTCCTTTGGAACCGCGGGTATATGGGCCGGGATGATAGTTGGTGGGACCGGCATTCAGACAATAATACTAGCTGTTATAACAATTAAAAGAGATTGGGAAAAAGAGGCGGAGAGTTCTAGTTTACGGGTGAAGAAGTGGTCAGGCCATGATGATGATCAACCACAATTTTTAAACGAGTAA 1521 47.4 MGTVINRDDEDLNQPLIHEEPTATQNDDYHAQVQAEDKDLKLSSRVWIETRKLWQIVGPAIFSRLASFTMNVVTQAFAGHLGDVELAAITIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYEMLGVYLQRSWIVLFLCCLLLLPFYFFATPLLKLIGQSDAVAEESGVVALWLIPLHFSFAFQFPLQRFLQSQLKNPIIAYVSLVGLVVNVFSCWLFIYVLDFGVVGAAVALDISWWLNGLGLYIYVVGGWCPKTWSGFSLQAFSGLWEFTKLSAASGVMLCLETWYYRILILLTGHLQNATVALDALSICMNINGWELMIPLAFLAATGVRVANELGGGNGKAAKYAALVSVIHSTMIGLFFFILIIILHDKIAYIFTTSTDVVEAVDSLSHLLAFTILLNSVQPVLSGVAIGSGWQAWVAYINLGCYYFIGLPLGILMGWVFSFGTAGIWAGMIVGGTGIQTIILAVITIKRDWEKEAESSSLRVKKWSGHDDDQPQFLNE 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10806673 10815081 + Conep04aG0136100.1 Cone4ag1315 436293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1315 506 PANTHER MULTIDRUG RESISTANCE PROTEIN 42 482 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone4ag1315 506 Pfam MatE 59 219 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone4ag1315 506 Pfam MatE 281 441 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone4ag1315 506 NCBIfam MATE family efflux transporter 59 455 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone4ag1315 506 CDD MATE_eukaryotic 49 484 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1315 K03327 - - mdm:114821666 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0504 Cone-Chr10:2316918 Cone4ag1315 Cone-Chr4:10806673 5.52E-139 dispersed
Cone3ag0529 Cone-Chr3:2604945 Cone4ag1315 Cone-Chr4:10806673 4.07E-143 dispersed
Cone3ag0530 Cone-Chr3:2627827 Cone4ag1315 Cone-Chr4:10806673 7.68E-56 dispersed
Cone4ag1315 Cone-Chr4:10806673 Cone7ag1795 Cone-Chr7:11763816 6.82E-162 dispersed
Cone14ag0111 Cone-Chr14:514722 Cone4ag1315 Cone-Chr4:10806673 2.00E-43 wgd
Cone17ag1199 Cone-Chr17:8759756 Cone4ag1315 Cone-Chr4:10806673 2.40E-223 wgd
Cone17ag1153 Cone-Chr17:8512671 Cone4ag1315 Cone-Chr4:10806673 2.02E-48 wgd
Cone20ag0535 Cone-Chr20:2934404 Cone4ag1315 Cone-Chr4:10806673 2.94E-221 wgd
Cone4ag1315 Cone-Chr4:10806673 Cone6ag1543 Cone-Chr6:12118169 3.90E-212 wgd
Cone4ag1315 Cone-Chr4:10806673 Cone8ag0208 Cone-Chr8:1120557 5.93E-236 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129