Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1316 ATGGCTCTAGAAACTGTGGTGTACCCACAAGACAACACATCTACTATATTCAGTTGCAGTATCAAGAACCTCCTCTCCGTCTCGTCTGGGCTAGGATTCCCCGGCAGCGGCCACGGCGTCGGCTGTTGGGGTTATTTCGATCATCACCATCTCCCAGACATGGAAAGTGCTATTCACGATCATCGGTATGTTAAGGATGACTACTATAACCATCAGTACCTGCCCTATTCTAATTACTCTTCACCTGATCAAAATCTCCGGCAAGGTCCAGCTCATGAAGTAGATGACCTCATCCCTCCTTCGTTAACAGAGCCACCAGCTCCGGCAAGAGCACTATTCACAGCGACCAGTGGTAGTAGTAGTAGTAGGAGGAAAAGAAGGAGGTGCAATAAGAGCATGAAGGACAAGGAACAGATGGAGAATCAAAGGATGACTCATATTGTAGTAGAGAGAAACCGCCGCAAGCAGATGAATCACTACCTTGCCCTTCTCCGCTCCTTGATGCCTTCTTCTTACGTTCAAAGGGGCGACCAAGCATCTATTATAGGAGGGGCAATTAATTTTGTGAAAGAGCTAGAGCAGCACTTGCAATTCATTCAGGCCCATAAGTACTTACCACAACCACTTGATCATCATCTCCCATCCGATCCATTTGCGGAGTTCTTCACCTTCCCACAGTACTCGACACGAGCAACAACTCCTCCGACCAAAGAGGAAAAGGAGGTGGAGCCGCCGTTAGTGGCGGCAGATATTGAAGTGACGATGTCAGACAGCCATGCAAACCTTAAAATACAGTCTAGAAAACAGCCCAAGCAGTTATTGAAGTTGGTTGTTGGGCTTCAGAGCTTGAGGCTTAGTGTTCTTCACCTTAATGTTACCACCACTCCTGATCAAATGGTTATGTACTCATTTAGTGTTAAGGTTGAAGAAGAGTGTCAGCTGAGTACAATGGATGACATAGCAGCGGCAGTTAATCAAATGCTACATGCAGTTAATCAAGAGGAGGTTACTATCAGCTAA 1020 46.37 MALETVVYPQDNTSTIFSCSIKNLLSVSSGLGFPGSGHGVGCWGYFDHHHLPDMESAIHDHRYVKDDYYNHQYLPYSNYSSPDQNLRQGPAHEVDDLIPPSLTEPPAPARALFTATSGSSSSRRKRRRCNKSMKDKEQMENQRMTHIVVERNRRKQMNHYLALLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQFIQAHKYLPQPLDHHLPSDPFAEFFTFPQYSTRATTPPTKEEKEVEPPLVAADIEVTMSDSHANLKIQSRKQPKQLLKLVVGLQSLRLSVLHLNVTTTPDQMVMYSFSVKVEEECQLSTMDDIAAAVNQMLHAVNQEEVTIS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10820470 10821680 + Conep04aG0136200.1 Cone4ag1316 436294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1316 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 192 IPR011598 GO:0046983(InterPro)
Cone4ag1316 339 SMART finulus 147 198 IPR011598 GO:0046983(InterPro)
Cone4ag1316 339 Gene3D - 121 205 IPR036638 GO:0046983(InterPro)
Cone4ag1316 339 MobiDBLite consensus disorder prediction 104 141 - -
Cone4ag1316 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 206 IPR036638 GO:0046983(InterPro)
Cone4ag1316 339 Pfam Helix-loop-helix DNA-binding domain 142 193 IPR011598 GO:0046983(InterPro)
Cone4ag1316 339 PANTHER MAX DIMERIZATION, MAD 82 328 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1201 Cone-Chr17:8768360 Cone4ag1316 Cone-Chr4:10820470 2.17E-81 dispersed
Cone4ag1316 Cone-Chr4:10820470 Cone7ag1260 Cone-Chr7:9361322 1.67E-183 dispersed
Cone20ag0528 Cone-Chr20:2865702 Cone4ag1316 Cone-Chr4:10820470 9.18E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45997 PF00538 Linker_histone 9.50E-10 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1316 - - - 0.0