Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1316 | ATGGCTCTAGAAACTGTGGTGTACCCACAAGACAACACATCTACTATATTCAGTTGCAGTATCAAGAACCTCCTCTCCGTCTCGTCTGGGCTAGGATTCCCCGGCAGCGGCCACGGCGTCGGCTGTTGGGGTTATTTCGATCATCACCATCTCCCAGACATGGAAAGTGCTATTCACGATCATCGGTATGTTAAGGATGACTACTATAACCATCAGTACCTGCCCTATTCTAATTACTCTTCACCTGATCAAAATCTCCGGCAAGGTCCAGCTCATGAAGTAGATGACCTCATCCCTCCTTCGTTAACAGAGCCACCAGCTCCGGCAAGAGCACTATTCACAGCGACCAGTGGTAGTAGTAGTAGTAGGAGGAAAAGAAGGAGGTGCAATAAGAGCATGAAGGACAAGGAACAGATGGAGAATCAAAGGATGACTCATATTGTAGTAGAGAGAAACCGCCGCAAGCAGATGAATCACTACCTTGCCCTTCTCCGCTCCTTGATGCCTTCTTCTTACGTTCAAAGGGGCGACCAAGCATCTATTATAGGAGGGGCAATTAATTTTGTGAAAGAGCTAGAGCAGCACTTGCAATTCATTCAGGCCCATAAGTACTTACCACAACCACTTGATCATCATCTCCCATCCGATCCATTTGCGGAGTTCTTCACCTTCCCACAGTACTCGACACGAGCAACAACTCCTCCGACCAAAGAGGAAAAGGAGGTGGAGCCGCCGTTAGTGGCGGCAGATATTGAAGTGACGATGTCAGACAGCCATGCAAACCTTAAAATACAGTCTAGAAAACAGCCCAAGCAGTTATTGAAGTTGGTTGTTGGGCTTCAGAGCTTGAGGCTTAGTGTTCTTCACCTTAATGTTACCACCACTCCTGATCAAATGGTTATGTACTCATTTAGTGTTAAGGTTGAAGAAGAGTGTCAGCTGAGTACAATGGATGACATAGCAGCGGCAGTTAATCAAATGCTACATGCAGTTAATCAAGAGGAGGTTACTATCAGCTAA | 1020 | 46.37 | MALETVVYPQDNTSTIFSCSIKNLLSVSSGLGFPGSGHGVGCWGYFDHHHLPDMESAIHDHRYVKDDYYNHQYLPYSNYSSPDQNLRQGPAHEVDDLIPPSLTEPPAPARALFTATSGSSSSRRKRRRCNKSMKDKEQMENQRMTHIVVERNRRKQMNHYLALLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQFIQAHKYLPQPLDHHLPSDPFAEFFTFPQYSTRATTPPTKEEKEVEPPLVAADIEVTMSDSHANLKIQSRKQPKQLLKLVVGLQSLRLSVLHLNVTTTPDQMVMYSFSVKVEEECQLSTMDDIAAAVNQMLHAVNQEEVTIS | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10820470 | 10821680 | + | Conep04aG0136200.1 | Cone4ag1316 | 436294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1316 | 339 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 141 | 192 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1316 | 339 | SMART | finulus | 147 | 198 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1316 | 339 | Gene3D | - | 121 | 205 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1316 | 339 | MobiDBLite | consensus disorder prediction | 104 | 141 | - | - | |
Cone4ag1316 | 339 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 140 | 206 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1316 | 339 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 193 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1316 | 339 | PANTHER | MAX DIMERIZATION, MAD | 82 | 328 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1201 | Cone-Chr17:8768360 | Cone4ag1316 | Cone-Chr4:10820470 | 2.17E-81 | dispersed | |
Cone4ag1316 | Cone-Chr4:10820470 | Cone7ag1260 | Cone-Chr7:9361322 | 1.67E-183 | dispersed | |
Cone20ag0528 | Cone-Chr20:2865702 | Cone4ag1316 | Cone-Chr4:10820470 | 9.18E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45997 | PF00538 | Linker_histone | 9.50E-10 | CL0123 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1316 | - | - | - | 0.0 |