Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1328 ATGGCGTCCTCTTTTCCTTCCTCCAGTCTACTTTTCAACCTCTCACTCTTTCTTACACTCCTCCATTTCACCTCCGCCGCAAGGCCACTCACAGAACAACAACAACCCCTTCTCTTCCAATACCACAACGGCCCTCTCCTCACCGGAAACATCTCTGTCAACCTCATATGGTACGGCCAGTTCAGCCCTTCCCAGCGAGCCATCGTCACAGATTTCATTTCCTCGCTCTCTTCTTCTTCCAAATCGATATCAACGCAACCCTCCGTGGCTACCTGGTGGAAAGCAATCGACAAATACTACAAACGCCAGCCCCTCACAGGATCCAGGAAAACCCCCGCCGCCGTTAAACTCTCAGCCGGAATTCAAATCCTAGATCCGAATTTCTCTCTGGGTAAATCTCTCACCACCAAACAGATCGTAAAGCTAGCGTCAAAGGGCGGCCAAAGAAACGCCATCAACGTCGTTTTGACCTCGGCTGACGTATCAGTGGATGGGTTCTGCTTCAATAAGTGTGGGTCCCACGGCTCTTCCGGCACGAGGTCCAAGTTCGCCTACATCTGGGTGGGTAACTCGGAGAGTCAGTGCCCTGGCCAATGCGCCTGGCCATTCCACCAGCCAATCTACGGTCCACAGAGCCCACCCCTTGTCGCGCCCAACAACGATGTGGGCCTGGACGGGATGATCATCAACCTGGCCAGTCTTTTGGCGGGAACGGCAACGAACCCGTTTGGGAACGGGTACTTTCAGGGACCGAAAGAAGCGCCGTTGGAGGCTGCATCGGCTTGTCCCGGGGTGTACGGAAGTGGGGCCTACCCCGGGAATGCTGGGGATTTGTTGGTGGACCCTACAAGTGGTGGGAGCTACAATGCTCATGGGGTTAATGGTCGGAAATACTTGCTTCCGGCTTTGTTTGATCCTTCTTCCTCCACATGCACCACTTTGGTTTGA 948 54.11 MASSFPSSSLLFNLSLFLTLLHFTSAARPLTEQQQPLLFQYHNGPLLTGNISVNLIWYGQFSPSQRAIVTDFISSLSSSSKSISTQPSVATWWKAIDKYYKRQPLTGSRKTPAAVKLSAGIQILDPNFSLGKSLTTKQIVKLASKGGQRNAINVVLTSADVSVDGFCFNKCGSHGSSGTRSKFAYIWVGNSESQCPGQCAWPFHQPIYGPQSPPLVAPNNDVGLDGMIINLASLLAGTATNPFGNGYFQGPKEAPLEAASACPGVYGSGAYPGNAGDLLVDPTSGGSYNAHGVNGRKYLLPALFDPSSSTCTTLV 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10881261 10882652 - Conep04aG0137400.1 Cone4ag1328 436306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1328 315 PANTHER PROTEIN EXORDIUM-LIKE 5 21 314 IPR006766 -
Cone4ag1328 315 Pfam Phosphate-induced protein 1 conserved region 40 314 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1328 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1211 Cone-Chr17:8817411 Cone4ag1328 Cone-Chr4:10881261 4.75E-133 dispersed
Cone4ag1328 Cone-Chr4:10881261 Cone7ag1270 Cone-Chr7:9428046 2.97E-148 dispersed
Cone4ag1328 Cone-Chr4:10881261 Cone4ag1329 Cone-Chr4:10885143 2.20E-146 tandem
Cone12ag0978 Cone-Chr12:8398814 Cone4ag1328 Cone-Chr4:10881261 5.89E-124 wgd
Cone17ag1210 Cone-Chr17:8813590 Cone4ag1328 Cone-Chr4:10881261 2.11E-105 wgd
Cone20ag0513 Cone-Chr20:2770077 Cone4ag1328 Cone-Chr4:10881261 9.47E-113 wgd
Cone4ag1328 Cone-Chr4:10881261 Cone7ag1269 Cone-Chr7:9423241 3.04E-209 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88