Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1330 ATGGAGGTTAGCGATTCTACAAAGCATGGTATCTCTTACGAAGATGATTATAAAGCCCTCAATCTTTTTCCAAACAATAGCCTAACTAGTAAATCTGTTGATCTTCTACCCTTTGAGAGCTGCTCGGTTGTTGAAAAACCTAATAAGCTATTGGAACAACAACATCAAGATCATGATCATCACGATGATGATGCAAGCGTGGCATTACGAATTGGGCTTCCGCAATATTACTCTTCGGTTGATCTTGGATCTAGCACGAGGGCCAACAATACAAACCAGGATCCAACTCCCAACAAGTTCTGGATTCCCACTTCGGAACAGATTGTCATGGGCTTTACTCATTTCTTCTGTAGTCTCTGCTTCAAAACCTTCAACCGATACAACAATCTTCAGATGCACATGTGGGGCCACGGGTCGCAATATCGAAAGGGCGGTCATTCACTAAAGACGAGACAGCCAAGTACTGGAGGCAGGGCCAGACCGGCCGTGTTGGAAATGCCATGCTACTGCTGTGAAGAAGGGTGCAAGAACAACATAGGGCATCCAAAAGCAAAGCCATTAAAAGATTTTAGAACTCTCCAAACACACTACAAGAGGAAGCATGGGAGCAGGCCATTTGAATGTAGAAAGTGTGGGAAGTTGTTGGCTGTGAAGGGTGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCGTTGGCTGTGTGTTTGTGGGTCCGACTTCAAGCATAAGAGGTCTCTTAAAGACCATTATAGAAAGTGGAATTGCTATGATTGTTGGCCACAGATGACGAATTGCTGGTGCTGTTGCAACAGGTGGGGTGTTGGTATTGAGATAGGGCGTGATGCTAAAAGAGATGAGATAGTGAGGATTGTTAGGGAGTTGATGGAGGGAGAGAAGGGTATAGAGATAGGGAAGAAAGCTATGGATTGGAAGGGTAGAGCTATGGAGGCTACTACGAGTGTTGATGGGTCAAATTAA 978 44.79 MEVSDSTKHGISYEDDYKALNLFPNNSLTSKSVDLLPFESCSVVEKPNKLLEQQHQDHDHHDDDASVALRIGLPQYYSSVDLGSSTRANNTNQDPTPNKFWIPTSEQIVMGFTHFFCSLCFKTFNRYNNLQMHMWGHGSQYRKGGHSLKTRQPSTGGRARPAVLEMPCYCCEEGCKNNIGHPKAKPLKDFRTLQTHYKRKHGSRPFECRKCGKLLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHYRKWNCYDCWPQMTNCWCCCNRWGVGIEIGRDAKRDEIVRIVRELMEGEKGIEIGKKAMDWKGRAMEATTSVDGSN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10887574 10888690 - Conep04aG0137600.1 Cone4ag1330 436308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1330 325 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 261 319 - -
Cone4ag1330 325 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 205 229 - -
Cone4ag1330 325 PANTHER ZINC FINGER PROTEIN WIP2 38 255 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone4ag1330 325 Gene3D Glycogen Phosphorylase B; 262 317 - -
Cone4ag1330 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Cone4ag1330 325 SUPERFAMILY beta-beta-alpha zinc fingers 188 226 IPR036236 -
Cone4ag1330 325 SUPERFAMILY beta-beta-alpha zinc fingers 106 137 IPR036236 -
Cone4ag1330 325 Gene3D Classic Zinc Finger 183 261 - -
Cone4ag1330 325 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1330 Cone-Chr4:10887574 Cone6ag0465 Cone-Chr6:2295739 2.39E-87 dispersed
Cone4ag1330 Cone-Chr4:10887574 Cone7ag1271 Cone-Chr7:9434418 3.06E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45998 PF00956 NAP 4.10E-82 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1330 - - - 0.0