Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1330 | ATGGAGGTTAGCGATTCTACAAAGCATGGTATCTCTTACGAAGATGATTATAAAGCCCTCAATCTTTTTCCAAACAATAGCCTAACTAGTAAATCTGTTGATCTTCTACCCTTTGAGAGCTGCTCGGTTGTTGAAAAACCTAATAAGCTATTGGAACAACAACATCAAGATCATGATCATCACGATGATGATGCAAGCGTGGCATTACGAATTGGGCTTCCGCAATATTACTCTTCGGTTGATCTTGGATCTAGCACGAGGGCCAACAATACAAACCAGGATCCAACTCCCAACAAGTTCTGGATTCCCACTTCGGAACAGATTGTCATGGGCTTTACTCATTTCTTCTGTAGTCTCTGCTTCAAAACCTTCAACCGATACAACAATCTTCAGATGCACATGTGGGGCCACGGGTCGCAATATCGAAAGGGCGGTCATTCACTAAAGACGAGACAGCCAAGTACTGGAGGCAGGGCCAGACCGGCCGTGTTGGAAATGCCATGCTACTGCTGTGAAGAAGGGTGCAAGAACAACATAGGGCATCCAAAAGCAAAGCCATTAAAAGATTTTAGAACTCTCCAAACACACTACAAGAGGAAGCATGGGAGCAGGCCATTTGAATGTAGAAAGTGTGGGAAGTTGTTGGCTGTGAAGGGTGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCGTTGGCTGTGTGTTTGTGGGTCCGACTTCAAGCATAAGAGGTCTCTTAAAGACCATTATAGAAAGTGGAATTGCTATGATTGTTGGCCACAGATGACGAATTGCTGGTGCTGTTGCAACAGGTGGGGTGTTGGTATTGAGATAGGGCGTGATGCTAAAAGAGATGAGATAGTGAGGATTGTTAGGGAGTTGATGGAGGGAGAGAAGGGTATAGAGATAGGGAAGAAAGCTATGGATTGGAAGGGTAGAGCTATGGAGGCTACTACGAGTGTTGATGGGTCAAATTAA | 978 | 44.79 | MEVSDSTKHGISYEDDYKALNLFPNNSLTSKSVDLLPFESCSVVEKPNKLLEQQHQDHDHHDDDASVALRIGLPQYYSSVDLGSSTRANNTNQDPTPNKFWIPTSEQIVMGFTHFFCSLCFKTFNRYNNLQMHMWGHGSQYRKGGHSLKTRQPSTGGRARPAVLEMPCYCCEEGCKNNIGHPKAKPLKDFRTLQTHYKRKHGSRPFECRKCGKLLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHYRKWNCYDCWPQMTNCWCCCNRWGVGIEIGRDAKRDEIVRIVRELMEGEKGIEIGKKAMDWKGRAMEATTSVDGSN | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10887574 | 10888690 | - | Conep04aG0137600.1 | Cone4ag1330 | 436308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1330 | 325 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 261 | 319 | - | - | |
Cone4ag1330 | 325 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 205 | 229 | - | - | |
Cone4ag1330 | 325 | PANTHER | ZINC FINGER PROTEIN WIP2 | 38 | 255 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Cone4ag1330 | 325 | Gene3D | Glycogen Phosphorylase B; | 262 | 317 | - | - | |
Cone4ag1330 | 325 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 115 | 142 | IPR013087 | - | |
Cone4ag1330 | 325 | SUPERFAMILY | beta-beta-alpha zinc fingers | 188 | 226 | IPR036236 | - | |
Cone4ag1330 | 325 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 137 | IPR036236 | - | |
Cone4ag1330 | 325 | Gene3D | Classic Zinc Finger | 183 | 261 | - | - | |
Cone4ag1330 | 325 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 137 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1330 | Cone-Chr4:10887574 | Cone6ag0465 | Cone-Chr6:2295739 | 2.39E-87 | dispersed | |
Cone4ag1330 | Cone-Chr4:10887574 | Cone7ag1271 | Cone-Chr7:9434418 | 3.06E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45998 | PF00956 | NAP | 4.10E-82 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1330 | - | - | - | 0.0 |