Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1333 ATGGCCAAACACAATTGCTGCTTTCTAGGAATATGGAGGCAGAAGAAGGAAGATAAGGCAACTTTGAAATCAAAAAAACATGTTGATGTAAAGGTGATTAGCCATGAGAACCCTCTTAAAGAAGCAGAAGAGGTAGAAGAGAACCAGGCAAAGCCGACCTATAATGAGGGATGGTTCGATTTGAGAAACAACATTGGATTTTCTCATCCATCAGGACCCGAAGTAAATAATGATCGAGAACAATCTGATTATGAAGTAGCTATGAGCAATGAAGGCTATGAAAGGGATTCTCCAGACATGTTCCAAACGGGACATCTAAGTGATCCCGGGCTCGAAAAATCAGATCACACCTGGGTCCCACCACGGCAAGGTGGAGGAGGAGGATACTGCTCAGACACTCTCGAACCGAACCGAGATAAGCAGTTGAGCAAGACATGCTCACCCGGATCATTCACGGAAGCAGAATCCTCATCCTTGAACAAAGGCCAAACTTTCACCAGGTTTCGAAACAACGATTCGGGCTTATGGCCTCATCATCATAATAACCAGTTGGTCGGTTTTGGTTTCTCAACAGAATCATCATCCTTAGCGAGAGTGAATGAATGGGTGAAAGATCTTCAAACCCATCCAAAAGATATCAATGACGATGTTGATCAGGATGATGTCATTATCTCTCCACCATCCCTTCCTTGTACCAGAAAATACTCCCCCGAAAAAAGCACAAGTAATGGAGATCACATTATTCTCCGGTCACTTAATTCTTCCTCTACTGTGGTCCATATCTCGAGTATTGGCCTGAAAGATATCCCTAACATCTCACAATTCTCAAGTATCCGAACAATTAACTTGTCCGGAAATTCCATAGACCACATTGGTTCAAGAACACTACCTAAAGGACTACACACTCTAAACTTGTCTCATAACAAGATCAATGCCGTTGAAGGGTTCCGTGAATTAACGCGATTAAGAGTACTCGATCTTAGTTGCAATCGAATCTCTAGAATCGGACAAGGGTTGTCAAATTGTACAATGATCAAAGAACTGTATCTAGCCGGGAACAAGATAAGCGACGTAGAAGGGCTTCATAGACTATTGAAGCTAACAGTATTGGACCTGAGTTTTAACAAGATAATAACAACAAAGGCTCTAGGTCAGCTTGTGGCTAACTACAATTCATTGCAAGCTCTTAATATTTTGGGGAACCCGATTCAAAGCAATGTGAGTGATGATCAGCTGCAGAAAATAATACGGGGCCTACTTCCGAATTTGGTTTACTTGAACAAGCAAGTTATCAAAGCACAGAGAGCACTTGAAGGGTTGAATGATAGTGTGGCTAAGGCTGCGCTTGGGACCAGTGGTGCGAGCTATCGGAGAAGAACGGGAAAGAAAGTGACTCATGGACAAGGTGGATTGGTTGTGGGAGGTGGGCAGAGGATCCGGCAGAAAGCTGGACAGAAGTCAAAAGGGCAAGGTCAGCTGCAGTTGGAGAGAAGGACGGGATAA 1503 43.58 MAKHNCCFLGIWRQKKEDKATLKSKKHVDVKVISHENPLKEAEEVEENQAKPTYNEGWFDLRNNIGFSHPSGPEVNNDREQSDYEVAMSNEGYERDSPDMFQTGHLSDPGLEKSDHTWVPPRQGGGGGYCSDTLEPNRDKQLSKTCSPGSFTEAESSSLNKGQTFTRFRNNDSGLWPHHHNNQLVGFGFSTESSSLARVNEWVKDLQTHPKDINDDVDQDDVIISPPSLPCTRKYSPEKSTSNGDHIILRSLNSSSTVVHISSIGLKDIPNISQFSSIRTINLSGNSIDHIGSRTLPKGLHTLNLSHNKINAVEGFRELTRLRVLDLSCNRISRIGQGLSNCTMIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKIITTKALGQLVANYNSLQALNILGNPIQSNVSDDQLQKIIRGLLPNLVYLNKQVIKAQRALEGLNDSVAKAALGTSGASYRRRTGKKVTHGQGGLVVGGGQRIRQKAGQKSKGQGQLQLERRTG 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10907930 10910475 - Conep04aG0138100.1 Cone4ag1333 436311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1333 500 Gene3D Ribonuclease Inhibitor 337 436 IPR032675 -
Cone4ag1333 500 MobiDBLite consensus disorder prediction 138 158 - -
Cone4ag1333 500 MobiDBLite consensus disorder prediction 483 500 - -
Cone4ag1333 500 Gene3D Ribonuclease Inhibitor 237 336 IPR032675 -
Cone4ag1333 500 MobiDBLite consensus disorder prediction 477 500 - -
Cone4ag1333 500 SUPERFAMILY Outer arm dynein light chain 1 260 431 - -
Cone4ag1333 500 FunFam Protein phosphatase 1 regulatory subunit pprA 233 417 - -
Cone4ag1333 500 ProSiteProfiles Leucine-rich repeat profile. 299 320 IPR001611 GO:0005515(InterPro)
Cone4ag1333 500 MobiDBLite consensus disorder prediction 140 158 - -
Cone4ag1333 500 Pfam Leucine Rich repeat 366 379 IPR001611 GO:0005515(InterPro)
Cone4ag1333 500 ProSiteProfiles Leucine-rich repeat profile. 366 387 IPR001611 GO:0005515(InterPro)
Cone4ag1333 500 ProSiteProfiles Leucine-rich repeat profile. 321 343 IPR001611 GO:0005515(InterPro)
Cone4ag1333 500 SMART LRR_sd22_2 364 380 - -
Cone4ag1333 500 SMART LRR_sd22_2 319 341 - -
Cone4ag1333 500 SMART LRR_sd22_2 297 318 - -
Cone4ag1333 500 SMART LRR_sd22_2 342 363 - -
Cone4ag1333 500 Pfam Leucine rich repeat 299 355 IPR001611 GO:0005515(InterPro)
Cone4ag1333 500 PANTHER NISCHARIN RELATED 152 459 - GO:0005737(PANTHER)
Cone4ag1333 500 SMART LRR_typ_2 319 342 IPR003591 -
Cone4ag1333 500 SMART LRR_typ_2 275 298 IPR003591 -
Cone4ag1333 500 SMART LRR_typ_2 364 385 IPR003591 -
Cone4ag1333 500 ProSiteProfiles Leucine-rich repeat profile. 344 365 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1333 Cone-Chr4:10907930 Cone8ag1473 Cone-Chr8:11271010 9.23E-27 dispersed
Cone17ag1215 Cone-Chr17:8831388 Cone4ag1333 Cone-Chr4:10907930 3.96E-57 wgd
Cone20ag0510 Cone-Chr20:2758377 Cone4ag1333 Cone-Chr4:10907930 1.59E-66 wgd
Cone4ag1333 Cone-Chr4:10907930 Cone7ag1596 Cone-Chr7:10914056 5.59E-234 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2