Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1335 ATGGATTGGTTGGGCTGCTTTCGTAGTTCTCAATCCAAGCTTGTGAGGGTAGAATCCGAGTCTAGCTCAGGTAAGGGAAGAAGCCATGAAGGGTTAATCAAGTATGGTTTCAGCCTAGTAAAAGGGAGAGCAGATCATCCCATGGAGGATTATCACGTTTCTAAGTTTGTTCAGATTCAAGAAAATGAGGTAGGGCTCTTTGCTATTTTTGACGGTCATCTTGGAGACACCGTCGCTGCCTATCTACAAAAGCATTTGTTCTCTAACATCCTAAAGGAGGAAGAGTTTTGGGGGGACCCCCCGAGAGCTATATCTAAAGCCTACGAGAAGACAGACCAGGCAATTCTCTCACAGAGTGCTGACTTGGGGCGAGGTGGGTCCACTGCTGTTACGGCTATTTTGATCAATGGTCAGAGGCTATATGTAGCCAATGTTGGAGATTCAAGAGCTGTTATTTCAAGGCGTGGTCAAGCAGAGCAAATGACCATTGACCATGAGCCCAACACAGAACGAGGCACCATTGAGAACAAAGGCGGCTTTGTCTCAAACTTGCCAGGAGATGTCCCTAGAGTTAATGGGCAGTTGGCCGTTTCTCGTGCTTTTGGAGACAAGAGCCTCAAATTACATTTGCGATCTGATCCCGACATACAGAATACTGATATTGATGGTCATACTGATATACTAATCCTTGCCAGCGATGGCGTTTGGAAGGTAATGAAGAATCAAGAGGCGATTGATATTGCAAGAGGGATCAAAGATCCATTAAAGGCTGCTAAGCAATTAACAGCTGCAGCATTGAGGAAAGCAAGCAAAGATGATATATCTTGTGTTGTGGTTAGATTTAGGTGA 849 44.99 MDWLGCFRSSQSKLVRVESESSSGKGRSHEGLIKYGFSLVKGRADHPMEDYHVSKFVQIQENEVGLFAIFDGHLGDTVAAYLQKHLFSNILKEEEFWGDPPRAISKAYEKTDQAILSQSADLGRGGSTAVTAILINGQRLYVANVGDSRAVISRRGQAEQMTIDHEPNTERGTIENKGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKLHLRSDPDIQNTDIDGHTDILILASDGVWKVMKNQEAIDIARGIKDPLKAAKQLTAAALRKASKDDISCVVVRFR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10921634 10924011 - Conep04aG0138300.1 Cone4ag1335 436313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1335 282 CDD PP2Cc 33 281 IPR001932 -
Cone4ag1335 282 SMART PP2C_SIG_2 45 281 IPR001932 -
Cone4ag1335 282 FunFam Probable protein phosphatase 2C 39 24 282 - -
Cone4ag1335 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cone4ag1335 282 SMART PP2C_4 30 279 IPR001932 -
Cone4ag1335 282 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Cone4ag1335 282 Gene3D - 29 282 IPR036457 -
Cone4ag1335 282 PANTHER PROTEIN PHOSPHATASE 26 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag1335 282 SUPERFAMILY PP2C-like 31 281 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0938 Cone-Chr10:4906845 Cone4ag1335 Cone-Chr4:10921634 5.28E-147 dispersed
Cone3ag1093 Cone-Chr3:29567925 Cone4ag1335 Cone-Chr4:10921634 9.15E-148 dispersed
Cone4ag1335 Cone-Chr4:10921634 Cone8ag1519 Cone-Chr8:11461738 2.61E-111 dispersed
Cone17ag1218 Cone-Chr17:8842993 Cone4ag1335 Cone-Chr4:10921634 9.68E-144 wgd
Cone20ag0507 Cone-Chr20:2741321 Cone4ag1335 Cone-Chr4:10921634 8.43E-129 wgd
Cone4ag1335 Cone-Chr4:10921634 Cone7ag1594 Cone-Chr7:10900747 3.92E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1335 K17506 - rcu:8281649 455.292