Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1336 ATGACAAGTGGTGGGTGTAGCATAGTTTGGTTCAGGAGAGATCTGAGGGTGGAAGATAACCCAGCTTTAGCTGCCGGAGTGAGAGCAGGGGCGGTGATACCGGTGTATATATGGGCGCCGGAAGAGGAGGGGCACTTCTATCCGGGGCGGGTTTCGCGGTGGTGGTTGAAACAGAGCTTAGCTCATCTCGACTCTTCTCTTAGGAGCCTCGGCACACGCCTTATCACTAAGAGATCAACTGACAGTCTTTCCACTTTGCTTGACCTCCTCAAATCTACCGGCGCTAATCAGCTCTTCTTCAACCACCTATATGATCCCTTGTCACTCATTAGAGATCACAGAGCAAAGGAGGTTTTAACAGGTCAAGGCATAGCAGTAAGATCCTTCAATGCAGACTTACTCTATGAACCATGGGATGTTAATGATGCTAACGGCCACGCCTTCTCGACCTTTGCTTCTTTCTGGGAAAGATGTCTTAGCATGCCGTATGACCCAGAGTCCCCACTTCTCCCTCCTAAGAGAATCATTTCAGGTGATTTGTTGAGGTGCCCTCCTGACACACTGGTCTTTGAAGATGAGCTAGAGAAGGGAAGCAATGCTCTTTTGGGCCGGGCCTGGTCACCTGGGTGGAGCAATGCAGACAAGGCCTTAGCCACGTTCGTCAACGGCCCCTTGATTGAGTACTCTAAGAACCGAAGAAAGGCCGATAGTGCAACAACCTCCTTCCTCTCCCCACACTTGCATTTTGGGGAAGTGAGCGTGAGAAAAGTCTTCCATGTAGTCCGAATCAAGCAGGTTCTCTGGGCTAATGAAGGAAACAAGGCCGGAGAAGAGAGCGTTAACTTGTTCCTCATGTCTATAGGACTAAGGGAATATTCTCGGTACATGAGCTTTAACCACCCTTACAGCCATGAAAGGCCTCTTCTTGGCCATTTAAAGTTTTTCCCATGGGTTGTGAATGAGGGCTATTTCAAGGCGTGGAGACAAGGTAGGACTGGTTATCCATTGGTCGATGCGGGTATGAGGGAATTGTGGGCGACGGGGTGGTTGCATGATCGGATAAGAGTAGTGGTTGCTAGTTTCTTTGTGAAGGTTTTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTCTGGATGCAGATCTCGAAAGTGATGCCCTTGGTTGGCAATATATTTCCGGTACTTTGCCTGATGGCCGGGAATTGGACCGCATTGATAATCCTCAGTTTGAGGGTTATAAATTCGATCCGAATGGAGAATATGTTCGGAGGTGGCTTCCGGAACTTTCTAGACTGCCAACCGAATGGATCCATCACCCATGGAATGCACCCGATTCTGTCCTCCAAGCTGCTGGGATCGAGCTCGGATCAAACTACCCTCTTCCCATCGTCAGTATAGATCAAGCAAAAGCCCGTTTGGAAGATGCATTATCCGAGATGTGGCAACAAGAAGCTTCTTCAAGAGCTGCAATTGAAAATGGCACTGAAGAGGGGCTAGGCGACTCTGAATCAATCCCAATTGCATTTCCACAAGACATCCAAATGGAGGAAAGTTTAGAACCTGTTAGAAACACCCCCCCTGCAATCCTCAGGCGATATGAGGATCAGATGGTCCCTAGCATGACCCTTTTGAGAGTAGAAGAGGAAGGACCTTCTGTGGGTGTTCAAAATTCTTCAGGGGATGGTAGAGCGGAAGTACCTATTAATGTCCATGTGAATGTAAATCATCATCAAGAGCAGAGAGAGGGTTTAGTAAATGGAGAAGCTTTGCCGAATGTTCATAGCAATAATATTGTCCCTCAGTTCACTGATGGGATAGGGATACATAGTGGTGGTGGGGCTGAAGACTCCACAGCAGAATCCTCTTCTAGTATTAGGAGAGAGAGGGATGGAGGTGTGGTTCCCGTTTGGTCTCCTTCTTCGGCTTATACCGAGCAGTTTGTTGTAGATGAAAATGGGATTAGGACCAGTTCGTCATATTTGCAGAGGCATCCTCAGACTCATCAAATAATGAATTGGAGGCGGCTATCTCAAACCGGGTAA 2055 48.08 MTSGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVYIWAPEEEGHFYPGRVSRWWLKQSLAHLDSSLRSLGTRLITKRSTDSLSTLLDLLKSTGANQLFFNHLYDPLSLIRDHRAKEVLTGQGIAVRSFNADLLYEPWDVNDANGHAFSTFASFWERCLSMPYDPESPLLPPKRIISGDLLRCPPDTLVFEDELEKGSNALLGRAWSPGWSNADKALATFVNGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHVVRIKQVLWANEGNKAGEESVNLFLMSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPDSVLQAAGIELGSNYPLPIVSIDQAKARLEDALSEMWQQEASSRAAIENGTEEGLGDSESIPIAFPQDIQMEESLEPVRNTPPAILRRYEDQMVPSMTLLRVEEEGPSVGVQNSSGDGRAEVPINVHVNVNHHQEQREGLVNGEALPNVHSNNIVPQFTDGIGIHSGGGAEDSTAESSSSIRRERDGGVVPVWSPSSAYTEQFVVDENGIRTSSSYLQRHPQTHQIMNWRRLSQTG 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10931992 10935861 - Conep04aG0138400.1 Cone4ag1336 436314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1336 684 Gene3D - 134 293 - -
Cone4ag1336 684 NCBIfam cryptochrome photoreceptor 6 482 IPR014134 GO:0009785(InterPro)|GO:0009882(InterPro)
Cone4ag1336 684 MobiDBLite consensus disorder prediction 613 641 - -
Cone4ag1336 684 FunFam Cryptochrome 1 8 147 - -
Cone4ag1336 684 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Cone4ag1336 684 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cone4ag1336 684 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Cone4ag1336 684 Pfam DNA photolyase 7 162 IPR006050 -
Cone4ag1336 684 Pfam FAD binding domain of DNA photolyase 284 481 IPR005101 -
Cone4ag1336 684 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Cone4ag1336 684 PRINTS DNA photolyase signature 332 348 IPR002081 -
Cone4ag1336 684 PRINTS DNA photolyase signature 391 405 IPR002081 -
Cone4ag1336 684 PRINTS DNA photolyase signature 352 370 IPR002081 -
Cone4ag1336 684 Coils Coil 470 490 - -
Cone4ag1336 684 PANTHER CRYPTOCHROME 5 487 IPR002081 GO:0003677(PANTHER)|GO:0003904(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0032922(PANTHER)|GO:0043153(PANTHER)|GO:0071949(PANTHER)
Cone4ag1336 684 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Cone4ag1336 684 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Cone4ag1336 684 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 175 IPR036155 -
Cone4ag1336 684 Gene3D HUPs 8 206 IPR014729 -
Cone4ag1336 684 Pfam Blue/Ultraviolet sensing protein C terminal 510 630 IPR020978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1336 K12118 - - rcu:8281647 1151.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0150 Cone-Chr14:730712 Cone4ag1336 Cone-Chr4:10931992 1.26E-219 dispersed
Cone15ag0161 Cone-Chr15:778673 Cone4ag1336 Cone-Chr4:10931992 3.26E-230 dispersed
Cone4ag1336 Cone-Chr4:10931992 Cone7ag1751 Cone-Chr7:11576842 6.15E-38 dispersed
Cone16ag0673 Cone-Chr16:8100963 Cone4ag1336 Cone-Chr4:10931992 1.90E-45 transposed
Cone4ag1336 Cone-Chr4:10931992 Cone7ag1593 Cone-Chr7:10895491 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39