Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1347 ATGGCGAATTATTCAGTACAAAGCGATGAAGCTGGTTGTGGCTTTATAGGTGGGATCTTCCATCTTCGATATTGCAAGTATTGGCTTAGAAAATCTTATGTTCATTCACTTCCCACTAACTATAACGTTAAAGACTGCACTCCCGATTTGGCTAAACCTTCGCTAAAAATTGAACCAAAACCAGCAACCAAAAAACCTACAATTACTACTGCTGCTGATAAAAAACATGAAACTAGAAGGCCTGCGGATGCTACGAGAAGCTCCACGTCATCTTCCTCCTCGTCCGGCCTGACCCAGTCCAAGCCGACACACGGTCAGCAGCAACCGAACGATCAAACCCAGGCTTTGGTCCGAGTCGGCCAATTGGGAGGTAATTTGAAACAGACCAAAACAGGGAGTTTTTCGAAAAATATGAACTCTCATAGAATGACAAAAGCTAAGAGCTTGGATCATGTTACAGCTGGTAATAATATGGGCAATATTGTGAGGAGGAACAGCGGTTCGTGTAAGTTAGATCCTGATGTGCTGAAATGCATGGGAAATGAGGCTTATAAACAGAACAGATTCCAAGAGGCTTTGAGTTTATATGATAAAGCAATTGGTTTGGGTTCAGACAAGGCAGTTTATTATAGCAACAAAAGTGCTGCTTTCATCGGATTGGACCGGCTCGTGGAGGCTGTCGAAGCATGCAAACAGGCTTTAAGGCTTGACCCTCTTTATCACAAAGCCCATCATCGATTGGCAACGTTGTATCTCAGATTTGGAGAGGTTGAGAAAGCATTGGATCATTTTGAACAATCTGGTTCACAATTTGAGGGGAAAGAGATTGAGAAGGCTCAGGCTATTCGGAATTGCCTAAGTCGGTGCAACGAAGCTAGGAAATCAAAAGAGTGGACTACTTTGTTAAATGAAACCCAATCTGCTATTTCATCTGGTGCAAATTCATCTCATAAGGTGTATGCCCTACAAGCAGAGGCTTTACTGAGGCTACAAAGACACCAAGAGGCATATTCCACCTATCGGAAAGGCCGGAGTTTAAGCATCGGCTCTCTACCGACTAGTATATTCAACTTGGCCGATTGCACGTACATTTTAGTTATTGAAACTGAGCTCTACATGACTATGGGCAGATTTGAGGAAGCCGTGGCAGCAGCAAATAGAGCGGTGAAAATTGATCCTACGAACAAGGAAGTGATTGCAATGGTGAAGAGGGCAAGAGCGATCTCATTAGCCAGATTGAGAGGTAACAGTCTTTTCAAGGAGTCCAAGTTTTTTGAGGCATCTGCTCGTTACAGTGAAGGACTTGAGCTGGATAGATCCAACTCGGTTTTGCTATGTAACCGGGCGGCTTGCCGGTCAAAGCTCGGTCAATTCGAGAAAGCCGTTGAAGATTGCACAGCCGCTCTTTCTGTACAACCTTGTTACAGCAAAGCTAGGCTCCGTAGGGCTCATTGCAATGCTCAATTGGAAAGATGGGAAGCTAGTATTGAGGACTATGAGGTACTATTGACAAGAGAGACTCCAGGGAATGAGGATGTGGGCCGGGCTTTGTTGGAGGCCCAGGTCCAGCTTAAGAAGCAACGTGGTGAAGACGTTGTACCAAGGGGAATGAAAATGACACATGCTGCAGAATCGGTCAAAGTAAAAGCTCGATAA 1656 44.69 MANYSVQSDEAGCGFIGGIFHLRYCKYWLRKSYVHSLPTNYNVKDCTPDLAKPSLKIEPKPATKKPTITTAADKKHETRRPADATRSSTSSSSSSGLTQSKPTHGQQQPNDQTQALVRVGQLGGNLKQTKTGSFSKNMNSHRMTKAKSLDHVTAGNNMGNIVRRNSGSCKLDPDVLKCMGNEAYKQNRFQEALSLYDKAIGLGSDKAVYYSNKSAAFIGLDRLVEAVEACKQALRLDPLYHKAHHRLATLYLRFGEVEKALDHFEQSGSQFEGKEIEKAQAIRNCLSRCNEARKSKEWTTLLNETQSAISSGANSSHKVYALQAEALLRLQRHQEAYSTYRKGRSLSIGSLPTSIFNLADCTYILVIETELYMTMGRFEEAVAAANRAVKIDPTNKEVIAMVKRARAISLARLRGNSLFKESKFFEASARYSEGLELDRSNSVLLCNRAACRSKLGQFEKAVEDCTAALSVQPCYSKARLRRAHCNAQLERWEASIEDYEVLLTRETPGNEDVGRALLEAQVQLKKQRGEDVVPRGMKMTHAAESVKVKAR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10995561 10997518 + Conep04aG0139500.1 Cone4ag1347 436325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1347 551 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 Pfam Tetratricopeptide repeat 371 395 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 Pfam Tetratricopeptide repeat 454 510 - -
Cone4ag1347 551 Pfam Tetratricopeptide repeat 179 238 - -
Cone4ag1347 551 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 72 540 IPR044534 GO:0005737(PANTHER)
Cone4ag1347 551 Gene3D Tetratricopeptide repeat domain 172 529 IPR011990 GO:0005515(InterPro)
Cone4ag1347 551 MobiDBLite consensus disorder prediction 69 83 - -
Cone4ag1347 551 MobiDBLite consensus disorder prediction 84 111 - -
Cone4ag1347 551 SUPERFAMILY TPR-like 412 526 IPR011990 GO:0005515(InterPro)
Cone4ag1347 551 SUPERFAMILY TPR-like 173 398 IPR011990 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 241 274 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 317 350 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 173 206 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 408 441 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 362 395 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 207 240 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 476 509 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 SMART tpr_5 442 475 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515(InterPro)
Cone4ag1347 551 MobiDBLite consensus disorder prediction 51 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1347 K09527 - - csv:101206173 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1347 Cone-Chr4:10995561 Cone9ag0214 Cone-Chr9:917068 4.10E-94 dispersed
Cone4ag1347 Cone-Chr4:10995561 Cone6ag1570 Cone-Chr6:12252524 2.23E-100 wgd
Cone4ag1347 Cone-Chr4:10995561 Cone7ag1584 Cone-Chr7:10847042 0 wgd
Cone4ag1347 Cone-Chr4:10995561 Cone9ag1490 Cone-Chr9:10951437 2.70E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39