Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1350 ATGGCAGCTACAATGGGTTTCTACAGTAGGAGATCTGCTATTGAATCGGATCCCATTAATGGAGGTGAGCTAATGGAAGCACTGGAACCTTTTATTAAAAGTGCTTCCCCTACCTCCTCCTATTCTTTTCATTCCCCTTCTTCCTCTCCCTTCTCCACCCCATCTCCATATCCTTCCTCCTCTTTCTCTTCCTTTCCTTCATACGACTTCCTCTCCTTCCCCCCTTCCGTCCAAACACACCCCATCTTTACGCCGGACGGTTGCTCTACCTCCATGAACCATGTATTTTCCGACGAATTCAAGGGCCATAACCTAGACCAACCTTGCGGCGCGATCGGGCTCAACAACCTAACCCAGGCTCAGATCCACCTGATCCAAGCTCAAATCCACCTCCCAACCCAACCCCAATTAATCAAAACCCAAACCTCTCAACATTCTCTCAAGTTTCTAAGCCCTAAACCTTTTCCGATGAAGCAAGCCGCCTCGCCGCCGAAATCGACCAAGCTTTACAGAGGCGTCAGGCAACGTCACTGGGGAAAATGGGTCGCTGAGATCCGGCTCCCTAAGAACCGTTCCCGGCTCTGGCTTGGCACGTTTGATACGGCTGAAGAAGCTGCTCTGGCTTATGACAAGGCGGCATATATGCTTAGAGGCGACTTTGCTAGGCTCAACTTCCCTCACCTTAAGCACCAGGGATCCTCTGTCGGAGGTGATTTCGGCGAGTACAAGCCCCTTCATTCCACTGTAGACGCTAAGCTGCAAGCTATTTGTCAGGGCTTGGCTGAAACGCAGAAACAGGCGAAAACGGAGAAGGCTGGTACTAAGAAACAGAGTATGGTTTCAGAGCTTGAGGCTGAACCGGATCTAGTTGTGGACGACGTGGGTTTGATGGGATCGGAGAGTTACTCGAAGGCGGAGGACCTGTCGTCGCCGGCAATTACTGACAGCGAAGGATCAGCTGGGTCTTCACCTTTGTCGCAACTTACGTTTTCTGACGATATAGAGTCGACATGGGATCATCAGGTGTCGGAGAATTTGATGTTGCAGAAGTACCCGTCGGAGATTGATTGGCTTCTATTAAGTAATTAG 1089 50.41 MAATMGFYSRRSAIESDPINGGELMEALEPFIKSASPTSSYSFHSPSSSPFSTPSPYPSSSFSSFPSYDFLSFPPSVQTHPIFTPDGCSTSMNHVFSDEFKGHNLDQPCGAIGLNNLTQAQIHLIQAQIHLPTQPQLIKTQTSQHSLKFLSPKPFPMKQAASPPKSTKLYRGVRQRHWGKWVAEIRLPKNRSRLWLGTFDTAEEAALAYDKAAYMLRGDFARLNFPHLKHQGSSVGGDFGEYKPLHSTVDAKLQAICQGLAETQKQAKTEKAGTKKQSMVSELEAEPDLVVDDVGLMGSESYSKAEDLSSPAITDSEGSAGSSPLSQLTFSDDIESTWDHQVSENLMLQKYPSEIDWLLLSN 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11006044 11007963 - Conep04aG0139800.1 Cone4ag1350 436328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1350 362 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 359 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone4ag1350 362 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677(InterPro)
Cone4ag1350 362 SMART rav1_2 169 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 CDD AP2 168 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 Pfam AP2 domain 169 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1350 362 FunFam Ethylene-responsive transcription factor 2 168 227 - -
Cone4ag1350 362 MobiDBLite consensus disorder prediction 305 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0408 Cone-Chr4:1847318 Cone4ag1350 Cone-Chr4:11006044 8.13E-33 dispersed
Cone4ag1350 Cone-Chr4:11006044 Cone6ag0849 Cone-Chr6:4331686 8.08E-38 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone4ag1350 Cone-Chr4:11006044 7.72E-86 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone4ag1350 Cone-Chr4:11006044 2.18E-81 wgd
Cone4ag1350 Cone-Chr4:11006044 Cone6ag1574 Cone-Chr6:12274587 2.86E-68 wgd
Cone4ag1350 Cone-Chr4:11006044 Cone7ag1581 Cone-Chr7:10838004 2.27E-192 wgd
Cone4ag1350 Cone-Chr4:11006044 Cone9ag1493 Cone-Chr9:10975569 9.59E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46001 PF00083 Sugar_tr 2.80E-113 CL0015 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1350 K09286 - mdm:103441637 349.362