Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1352 ATGGGTATTCGAGGAAGGCCAATTTTTGACCTCAATGAACCCCCTACAGAGGATAATGATGATAGTAGTGGCGTCTTACTCCAACCAAGGAAGACATTCCCATCTTCAAATTCCCATCCTTCAGACTTGGTTGTAGCTTTGGCTGATTTGCAAGGCATAATGAATAAAAATAATGCTTTCTCTCATGCATCATCAGTTTCGGGTTTTCAGCCATTTATCCGGGGAAAATCAACCAATAGCCCTGAGATGACAGCACCATTAAATAATGCCCAATCTGCGGAAAGAGAAGAAGGAGAATGGTCTGATGCTGAGGGCTCTTCCGATGCGTTTGGGAAGAGTAATTTACATGAAAACTCAACTTTACAAGAAAAAGCATTACCTTCTACTTCTGGTGTCTCTGCTGAGAAAAGCAATGATTGCATAAATTCTGAAAACGTCAAGGGTGATTTATCGATGGATTTCCAAGAGGAACTTGTTTTGGTTGCAAAACAAAGAGAAGTTAGAGGTATTGAAGCAAGTCATGAAGTTAAATGTGCTAATAATCCTGGAAAGAAAAGGCAAGATCATCATCAAGAAGCAAAACTTGGGAAGAAACGTAGTAGGCAAACAATGTTTCTTAATTTGGAGGATGTAAAGCAGGCTGGGCCCATTAAGGCTTCAACACCAAGAAGGCAGGCCTTTCCTCCTCCTATTACCACTCGGATTGTGAAAGAAGTACGGTCTACTACTCCAGTTACTGAACGGGTTGGAGAAAAGCAGTGTCCACCTGTGAACAAGGATAAAAAACAAGTTGATTTAGGATGCAATGATGGAGGCATTTCCCAGGAAACCAATGAATCTAAATCTGACTGCAACGGTGATATGAGTAATGGATCTTTAGCTGGGCCACCTAGGCTACAAAGTGATGGAGATCTTTCTGCAGATGTGTCATTGCCACCTATTCCTAGACAGGTTTCGTGGAAACTGCCTACAGATTCAAGGCAGGTGAAGAATTCACAAATCAATAATAGGAAAGTGGGTTTGAATAATCAAATTTATATGGATCCCAAACCGGTAAATAAGAAACATCTTCCGGTCAAGAAGCAAAATGCTATTAGTACTGCGTATCAGGATACATCCGTTGAACGGCTTATACGTGAAGTAACCAATGAAAAGTTTTGGCATCAACCAGGTGATGCTGAACTGCAGTGTGTCCCAGGTCAGTTTGAATCTGTAGAAGAGTATGTCAGAGTTTTTGAACCTTTGCTGTTCGAGGAATGCCGAGCTCAGCTTTACAGCACATGGGAAGAATCAACTGAAATAGTTTCAAGAGATATACATGTGATGGTTCATGTAAAGACCATGGAAAGGAAAGAAAGAGGATGGTATGATGTCATTGTCCTTCCTGCGAACGAGTGTAAGTGGTCCTTTAAGGAAGGTGATGTGGCTGTTCTTTCAACTCCAAGGCCTGGATCAGTCAGATCAAAGAGAGGTAACGCCTCATCGGTAGAAGATGATAATGAGCCTGAGATCACTGGACGTGTGGCTGGAACTGTTAGGCGGCATATTCCTCTTGACACTCGAGATCCACCTGGGGCAATACTACATTTTTATGTTGGGGACACGAGTGATAGGGTAGATGATGATCATGTTCTAAGAAAACTTCAGCCCAGAAGTGTGTGGTATCTTACCGTGCTTGGCTCTCTTGCAACCACCCAGCGAGAGTACATTGCCTTGCATGCATTCCGGCGACTAAATTTGCAGATGCAAAATTCAATCCTTCAACCTAGTCCTGAGCAATTCCCAAAATACGAGCAGCCACCTCCTGCCATGCCCGAGTGCTTCACTCAGAACTTCGTTGACTATTTGCATAGGACCTTCAATGGACCTCAGCTGGGAGCAATCCAGTGGGCTGCAATGCATACAGCTGCTGGGACAAGCAGTGGGACAACAAAGAAGCAAGATCCTTGGCCATTTACACTTGTACAAGGTCCCCCGGGAACTGGTAAGACACACACAGTGTGGGGGATGTTAAACGTTATCCATTTGGTGCAGTATCAACACTACTATACCTCGTTGCTTAAAAAACTAGCACCAGAAAGCTACAAGCAAGGTAATGAAAGCAGTTCAGAAAATATCGCTACTGGATCAATCGACGAGGTTCTTCATAAAATGGACCAGAATCTCTTCCGTACTCTTCCCAAGCTCTGTCCCAAACCTAGAATGTTAGTCTGTGCACCATCTAACGCTGCAACAGATGAGCTTCTCACCCGTGTTCTTGATCGTGGATTTATTGATGGTGAGATGAAAGTCTACAGACCTGATGTGGCTCGTGTTGGTGTCGACTCACAGACACGTGCTGCTCAGGCTGTTTCTGTTGAGCGGAGAACAGAACAGCTGTTGGTAAAAAGCCGTGAGGAAATCATAGGATGGATGCACCAGCTAAAGGGCCGTGAAGCCCAATTGTCTCAGCAGATATCAATCCTTCAAAGAGAACTTAATGCAGCTGCAGCTGCTGTTCGTTACCAAGGCTCTGTCAGTGTGGACCCTGACATTCTGGTAGCTCGAGATCAGAACCGTGATTCCTTGCTACAGAACCTTGCAGCTGTGGTCGAAGGCAGAGACAAAATTCTCGTAGAGATGTCCCGCCTTCTCATTCTAGAAGGCAAATTCCGAGCTGGAAACAACTTCAATCTGGAAGAAGCACGTGCTAATCTCGAGGCAAGCTTTGCAAACGAGGCTGAGATTGTTTTCACTACTGTCTCAAGTAGTGGTCGAAAATTGTTCTCCCGTCTTACTCATGGGTTTGATATGGTTGTCATTGATGAGGCTGCACAAGCGAGTGAAGTTGGAGTTCTTCCTCCTCTCTCTCTTGGTGCGGCTCGATGTGTGCTGGTAGGGGACCCACAACAGCTCCCTGCAACAGTTATTAGCAAAGCAGCTGGAACCTTGTTGTATAGTAGAAGTCTCTTTGAAAGGTTCCAGGAAGCTGGGTGTCCAACAATGTTACTATCGGTTCAGTATCGGATGCATCCTCAAATCCGGGATTTCCCTTCGAGGTATTTTTACCAAGGGCGACTTACTGACAGTGAAAGTGTAGCTAATTTACCAGATGAGGCATACTACAAGGACCCCTTACTTAAACCTTATTTGTTTTATGACGTAACTCATGGGCGGGAATCTCACAGAGGGGGATCTGTGTCCTATCAGAACATAAATGAAGCACAGTTTTGTCTCCGTTTGTATGAGCATCTTCAGAAAACTTCAAAAACAATAGGATCAGGGAAAGTCACTGTTGGTATAATAACACCATACAAGCTGCAGTTAAAATGCCTTCAACGTGAGTTTGAGGATGTTTTGAACTCCGAAGAAGGCAAGGATCTGTACATCAATACTGTTGATGCTTTCCAGGGTCAAGAGCGGGATGTGATTATTATGTCTTGTGTACGTGCCTCTGTTCATGGTGTTGGATTTGTTGCAGACATTCGTCGAATGAATGTTGCACTTACTCGTGCAAGGAGGGCTCTCTGGATTATGGGAAACGGCAATGCCTTGATAAAATCTGAGGACTGGGCAGAATTGATAACTGATGCCAAAGAAAGGAAGTGTTATATGGATATGGATTCCATACCTAAGGACTTTCTACTTCAAAAGGGACCCACATACAATGCCTCTCCTGGAAAGATTTCCTCTAATATGAGGGGTTTGAGGCCAACAGGGCCAAGACACAGGCAATTGGATATGCATATGGAGGATGAAGAAAAGTTGAATTCTTTGGTAATATCCAGGAATGGTGTTTATCGGACTTTGAAGCCACCCCCAGAAAATTCCTTGGATGAGTTTGATCAATCAGGTGACAGATCTAAAGATGCCTGGCAATATGGCATACAGAGGAAGCAAAGTTCAGCTGGTCTTGTGGGGAAGAGAGAGATTTAA 3915 44.11 MGIRGRPIFDLNEPPTEDNDDSSGVLLQPRKTFPSSNSHPSDLVVALADLQGIMNKNNAFSHASSVSGFQPFIRGKSTNSPEMTAPLNNAQSAEREEGEWSDAEGSSDAFGKSNLHENSTLQEKALPSTSGVSAEKSNDCINSENVKGDLSMDFQEELVLVAKQREVRGIEASHEVKCANNPGKKRQDHHQEAKLGKKRSRQTMFLNLEDVKQAGPIKASTPRRQAFPPPITTRIVKEVRSTTPVTERVGEKQCPPVNKDKKQVDLGCNDGGISQETNESKSDCNGDMSNGSLAGPPRLQSDGDLSADVSLPPIPRQVSWKLPTDSRQVKNSQINNRKVGLNNQIYMDPKPVNKKHLPVKKQNAISTAYQDTSVERLIREVTNEKFWHQPGDAELQCVPGQFESVEEYVRVFEPLLFEECRAQLYSTWEESTEIVSRDIHVMVHVKTMERKERGWYDVIVLPANECKWSFKEGDVAVLSTPRPGSVRSKRGNASSVEDDNEPEITGRVAGTVRRHIPLDTRDPPGAILHFYVGDTSDRVDDDHVLRKLQPRSVWYLTVLGSLATTQREYIALHAFRRLNLQMQNSILQPSPEQFPKYEQPPPAMPECFTQNFVDYLHRTFNGPQLGAIQWAAMHTAAGTSSGTTKKQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQGNESSSENIATGSIDEVLHKMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLTRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEIIGWMHQLKGREAQLSQQISILQRELNAAAAAVRYQGSVSVDPDILVARDQNRDSLLQNLAAVVEGRDKILVEMSRLLILEGKFRAGNNFNLEEARANLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQEAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDEAYYKDPLLKPYLFYDVTHGRESHRGGSVSYQNINEAQFCLRLYEHLQKTSKTIGSGKVTVGIITPYKLQLKCLQREFEDVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASVHGVGFVADIRRMNVALTRARRALWIMGNGNALIKSEDWAELITDAKERKCYMDMDSIPKDFLLQKGPTYNASPGKISSNMRGLRPTGPRHRQLDMHMEDEEKLNSLVISRNGVYRTLKPPPENSLDEFDQSGDRSKDAWQYGIQRKQSSAGLVGKREI 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11020297 11025927 + Conep04aG0140000.1 Cone4ag1352 436330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1352 1304 Gene3D - 1001 1207 IPR027417 -
Cone4ag1352 1304 FunFam P-loop containing nucleoside triphosphate hydrolase 1001 1207 - -
Cone4ag1352 1304 Pfam AAA domain 979 1175 IPR041679 -
Cone4ag1352 1304 Coils Coil 805 832 - -
Cone4ag1352 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 1202 IPR027417 -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 107 137 - -
Cone4ag1352 1304 Pfam AAA domain 628 972 IPR041677 GO:0004386(InterPro)
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 18 39 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 74 137 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 1 39 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 481 501 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 240 305 - -
Cone4ag1352 1304 CDD SF1_C_Upf1 1003 1192 IPR047187 -
Cone4ag1352 1304 CDD DEXXQc_SETX 620 1002 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 179 201 - -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 74 91 - -
Cone4ag1352 1304 PANTHER DNA2/NAM7 HELICASE FAMILY 226 1248 IPR045055 -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 270 289 - -
Cone4ag1352 1304 Gene3D - 550 1000 IPR027417 -
Cone4ag1352 1304 MobiDBLite consensus disorder prediction 1264 1304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1352 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1398 Cone-Chr20:8904541 Cone4ag1352 Cone-Chr4:11020297 1.22E-47 dispersed
Cone4ag1352 Cone-Chr4:11020297 Cone8ag0446 Cone-Chr8:2827246 1.53E-42 dispersed
Cone17ag0601 Cone-Chr17:3232269 Cone4ag1352 Cone-Chr4:11020297 4.13E-77 transposed
Cone4ag1352 Cone-Chr4:11020297 Cone7ag1580 Cone-Chr7:10823551 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37