Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1354 ATGAATTCGAAAGATAACTACTCGACTGAGGAAGAGCTCGAAACGAAGGAGATGGACGTGAGGAGTTTGTCATCTTCGCTCAATCAAGGCATAGAAAATGAGGATTACATTCACAAAGTTGGGATTCCCCCAAAGCAAAATTTCTACAACGAATTCATGTCCAATGTGAAAGAAACTTTATTTTCGGATGATCCCCTCCGTCCGTTCAAGGATCAAACCAAATCTCGGAAGCTCCTCCTAGGGATCGAAGCTGTTTTCCCTATCGTTGAGTGGGGTCGGTCCTACAATTTTGCTAAGCTTAGAGGGGACCTCATTGCTGGTCTCACTATTGCTAGTCTATGCATTCCACAAGATATTGGTTATGCAAAACTTGCAAATTTGGCCCCACAATATGGACTCTACTCGAGTTTTGTTCCGCCATTGATATACGCTTTCATGGGTAGCTCAAGAGATATAGCAATAGGGCCAGTTGCTGTTGTTTCTCTCTTGTTAGGGACTCTACTTGAGAGTGAGATTGATCCTTCTACAAACCCGGAAGAGTACAGACGCTTGGCATTTACGGCTACTTTTTTCGCTGGGATTACTCAAGTTAGCCTTGGTATCTTGAGGTTGGGTTTCTTGATTGATTTCCTATCTCATGCTGCCATTGTTGGCTTCATGGGAGGGGCTGCTATAACCATTGCTCTTCAACAGCTTAAGGGATTCCTTGGAATAAAAAAGTTCACAAAGAAAGCAGATATCATCTCTGTTATGCATTCTGTTTTTGGATCGGCCCTTCACGGATGGAACTGGCAGACGATAGTCATCGGAGCAAGCTTTTTATGTTTCCTTCTATTCGCTAAATTCATCGGAAAGAAGAAGAGGAGTCTTTTCTGGGTGCCGGCAATCGCTCCATTGATATCGGTTGTTCTATCTACGGTTTTCGTCTACATCACCCATGCAGAAAAGAAAGGGGTTGCAATTGTGAAACATATAGAGAAAGGAATCAATCCCCCATCTGTGAATGAAATTTATTTCAACGGTCAATACCTTGTCAAAGGTTTCCGAATCGGTGTTGTGGCCGGCATGGTTGCCCTAACCGAAGCCATAGCTATTGGAAGAACATTTGCTTCCATGAAGGACTATCAAATTGACGGGAACAAGGAAATGGTCGCACTTGGAACAATGAACGTCGTCGGTTCGATGACTTCTTGCTATGTCGCAACAGGCTCATTTTCTCGCTCGGCCGTGAATTATATGGCCGGATGCCGAACTGCAGTTTCAAACATCATTATGGCCCTAGTTGTATTCCTAACCTTGCAATTCTTGACCCCGCTTTTCAAATACACCCCAAACGCCATTCTTTCTGCCATCATTATCTCTGCAGTGATCAACCTGGTAGATTTTCAGGCAGCAATTTTGATATGGAAGATTGATAAATTCGATTTTGTTGCCTGCATGGGAGCCTTCTTTGGTGTTATCTTTGCCTCCGTTGAAATCGGTCTTTTAATTGCAGTCTCTATATCCTTTGCTAAGATTCTCTTACAAGTTACAAGACCAAGGACTGCAATTCTCGGAAATATTCCGAGAACATCTGTGTATAGAAACATCCAACAGTATCCGGATGCTACCAAAGTTCCGGGTGTTATGATCTTTAGAGTTGACTCTGCCATTTACTTTTCTAACTCTAATTACATCAAGGAGAGGATGTTGAGATGGTTGGCAGATGAAGAAGAACGAATCAAGGAGTACAAACAAAAAATCCAGTTTTTGATAGTTGAAATGTCACCTGTTACAGACATCGACACGAGCGGGATTCACGCGTTTGAAGAACTGCACAGGAGTCTCAAAAAGAGAAATATTCAGGTAATCATCATCATGGTACTGGCTAAATTATAA 1878 42.49 MNSKDNYSTEEELETKEMDVRSLSSSLNQGIENEDYIHKVGIPPKQNFYNEFMSNVKETLFSDDPLRPFKDQTKSRKLLLGIEAVFPIVEWGRSYNFAKLRGDLIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTLLESEIDPSTNPEEYRRLAFTATFFAGITQVSLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKADIISVMHSVFGSALHGWNWQTIVIGASFLCFLLFAKFIGKKKRSLFWVPAIAPLISVVLSTVFVYITHAEKKGVAIVKHIEKGINPPSVNEIYFNGQYLVKGFRIGVVAGMVALTEAIAIGRTFASMKDYQIDGNKEMVALGTMNVVGSMTSCYVATGSFSRSAVNYMAGCRTAVSNIIMALVVFLTLQFLTPLFKYTPNAILSAIIISAVINLVDFQAAILIWKIDKFDFVACMGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRTAILGNIPRTSVYRNIQQYPDATKVPGVMIFRVDSAIYFSNSNYIKERMLRWLADEEERIKEYKQKIQFLIVEMSPVTDIDTSGIHAFEELHRSLKKRNIQVIIIMVLAKL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11038032 11040909 - Conep04aG0140200.1 Cone4ag1354 436332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1354 625 Coils Coil 560 587 - -
Cone4ag1354 625 CDD STAS_SulP_like_sulfate_transporter 533 618 - -
Cone4ag1354 625 ProSiteProfiles STAS domain profile. 532 625 IPR002645 -
Cone4ag1354 625 MobiDBLite consensus disorder prediction 1 20 - -
Cone4ag1354 625 Gene3D STAS domain 512 625 IPR036513 -
Cone4ag1354 625 PANTHER SULFATE TRANSPORTER 56 619 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag1354 625 Pfam Sulfate permease family 100 481 IPR011547 GO:0016020(InterPro)
Cone4ag1354 625 ProSitePatterns SLC26A transporters signature. 129 150 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cone4ag1354 625 NCBIfam sulfate permease 87 619 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag1354 625 SUPERFAMILY SpoIIaa-like 534 619 IPR036513 -
Cone4ag1354 625 MobiDBLite consensus disorder prediction 1 19 - -
Cone4ag1354 625 Pfam STAS domain 533 619 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0474 Cone-Chr20:2524751 Cone4ag1354 Cone-Chr4:11038032 2.41E-268 dispersed
Cone4ag1354 Cone-Chr4:11038032 Cone7ag0674 Cone-Chr7:3672639 1.11E-171 dispersed
Cone4ag1354 Cone-Chr4:11038032 Cone6ag1580 Cone-Chr6:12317946 6.52E-207 wgd
Cone4ag1354 Cone-Chr4:11038032 Cone7ag1578 Cone-Chr7:10808977 0 wgd
Cone4ag1354 Cone-Chr4:11038032 Cone9ag1499 Cone-Chr9:11017937 1.12E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1354 K17470 - mdm:103401023 1018.07