Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1355 ATGGGAGTAGGAGGCACTTTAGAGTACTTCTCCGATCTACTTAGCAATGTCAAGAAAGGCAAGAAAAAGAAGCAAATCCAAACTGTAGCCCTCAAAGTAAGAATGGATTGCGAAGGATGCGAACGCAAAGTTAAGAACGTACTTTCCGGTGTAAAAGGGGTTAAATCAGTGGACGTAGACTTGAAGCAGCAGAAGGTGACAGTAACCGGATATATAGAGGCAAAGAAGGTGTTGAAGGCAGCCCAAACGACGAAAAAGAAGGTGGAGATGTGGCCTTATGTTCCATACTCTCTCGTGGCTAATCCATACGTTTCTCAGGCTTATGACAAGAAGGCCCCACCAAACATGGTTAGAAGCGTTCCAGACACGGTCACCATCACTGAGTCCACTGTTAACGACCACTACACCACCATGTTTAGTGATGACAACCCTAATGCTTGCTCTGTAATGTAA 453 45.03 MGVGGTLEYFSDLLSNVKKGKKKKQIQTVALKVRMDCEGCERKVKNVLSGVKGVKSVDVDLKQQKVTVTGYIEAKKVLKAAQTTKKKVEMWPYVPYSLVANPYVSQAYDKKAPPNMVRSVPDTVTITESTVNDHYTTMFSDDNPNACSVM 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11048599 11049544 - Conep04aG0140300.1 Cone4ag1355 436333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1355 150 CDD HMA 35 89 IPR006121 GO:0046872(InterPro)
Cone4ag1355 150 Pfam Heavy-metal-associated domain 32 83 IPR006121 GO:0046872(InterPro)
Cone4ag1355 150 SUPERFAMILY HMA, heavy metal-associated domain 26 92 IPR036163 GO:0046872(InterPro)
Cone4ag1355 150 ProSiteProfiles Heavy-metal-associated domain profile. 26 89 IPR006121 GO:0046872(InterPro)
Cone4ag1355 150 Gene3D - 23 90 - -
Cone4ag1355 150 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 26 150 IPR045181 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1355 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0532 Cone-Chr14:2670229 Cone4ag1355 Cone-Chr4:11048599 1.62E-12 dispersed
Cone17ag1250 Cone-Chr17:9003739 Cone4ag1355 Cone-Chr4:11048599 2.81E-84 dispersed
Cone4ag1355 Cone-Chr4:11048599 Cone6ag0404 Cone-Chr6:1941942 9.43E-41 dispersed
Cone8ag0788 Cone-Chr8:7920085 Cone4ag1355 Cone-Chr4:11048599 5.05E-63 transposed
Cone4ag1355 Cone-Chr4:11048599 Cone6ag1584 Cone-Chr6:12330894 7.95E-47 wgd
Cone4ag1355 Cone-Chr4:11048599 Cone9ag1504 Cone-Chr9:11032214 2.08E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g363 . . . Bda03g00506 . Bpe04g00461 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000681 5 3 2 3 4 3 4 3 3 3 3 3 4 3 3 3 3 4 4 3 3 3 3 3 3 3 3 6 3 3 99