Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1357 ATGCTGTCATCCTCTCCATCGTCTTCATTGTTTGGCGATTACATCGGCATGGAGAGCTGCGTTGATCTCAGAAGCAACCATGAAGATCGTGATGTTAATGAGGATCATGATCATGGTCAAGGTGGTGGTGGTGGTGGTGGGGTTAAGAGATCATCGGATCGACGGTGTAGGATGAAGAAGGAGATGAAGGTGAAGGAGTTTCCGCCGCCGATTCCTCTGCTGGCTCGGACGGGAAATCTGCAGTCTCATATGCCTTGGGTTTTGAAGCGAAGGTATACGAGCGATGGACGGTTGATACTGACCGAGGAAAAAGTACGTCATCATGAGTACTTTCGGGCCCACAGATTCAACGGCCGTCTTACGTTGCAGCTCGTTCCTCTTGATGGCGACGTTTTGTCCCCGGCTCGTCATCATGGCGATGTTTCAGATCATGTGGATGATGTTCATGGTGATATTGCAGCTGATGATCAATATGTGAATGCAGGAGCTGATTGTGAAGAAGATGATAAAAGTAGCGAGCCTGAGAATGTTGATGTTGATGATGATGACGAAGATCATGGTGGTGATGTTAATGTCTATGGTAATGAGAATGGGGGTTCTAGAACGATTTGTTGTCGTGGCGGTGGTGGAGGTGGTGGAGTTGGAGGAGGAGGAAAATGCTTGGGCATAAGCCACGTTGCCGTGGCGGCGTCGTCGTCATGTTTATTTTGCGTGCCAGTTCAAACAATCAGGCCAGTGATTCATAGTTAA 750 48.53 MLSSSPSSSLFGDYIGMESCVDLRSNHEDRDVNEDHDHGQGGGGGGGVKRSSDRRCRMKKEMKVKEFPPPIPLLARTGNLQSHMPWVLKRRYTSDGRLILTEEKVRHHEYFRAHRFNGRLTLQLVPLDGDVLSPARHHGDVSDHVDDVHGDIAADDQYVNAGADCEEDDKSSEPENVDVDDDDEDHGGDVNVYGNENGGSRTICCRGGGGGGGVGGGGKCLGISHVAVAASSSCLFCVPVQTIRPVIHS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11055676 11056425 + Conep04aG0140500.1 Cone4ag1357 436335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1357 249 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 16 187 IPR021410 -
Cone4ag1357 249 MobiDBLite consensus disorder prediction 25 56 - -
Cone4ag1357 249 MobiDBLite consensus disorder prediction 168 187 - -
Cone4ag1357 249 Pfam Fantastic Four meristem regulator 66 124 IPR046431 -
Cone4ag1357 249 MobiDBLite consensus disorder prediction 163 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1357 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0477 Cone-Chr20:2552602 Cone4ag1357 Cone-Chr4:11055676 1.33E-24 dispersed
Cone4ag1357 Cone-Chr4:11055676 Cone17ag1249 Cone-Chr17:8999394 3.19E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1357 Cone7ag1576 . . . . . . Blo17g00207 . . Bda13g01510 . Bpe14g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008200 2 1 1 0 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 34