Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1363 ATGGGAATATATGGAGCAGCTCACCAGGTTAGCGCACAAGCAAATGCCTTCAAGGATTATGATTTCCCGGATACAGATCTATTCGCTAATCCTATTGCTGATGTGGATGCTAGGCTAAAAAATAAGCTTGAATATGTATCTGATGAATCAATGGATGATCCCTTGACAAGCAATCAGGAAGCAAACCAGATAGTGGATAAAGTACAGAGACGTTTGGCTCAGAATCGCGAAGCTGCTCGGAAAAGCCGACTAAAGAAAAAGGCATATGTTCGACAATTAGAAACGACTCATCTAAAGCTAACACAACTAGAACTGGAACTTGAGAAAGTGAGACAGCAGTCCCTTAGAAAAAACTCACCTATTGATTCAAGGATTTCCGGAAATTTTGAAACAGGGATTGGAACATTTGAGATGCAATACGGCATATGGATTAACGAGCTACGAGTAAAAGACAATCAACTTAGAAATGCATTACAAGCTCTGATAAACGATATAGAAATTAGATTCATTGTAGAGAGTAGCTTGGATCACTATTACAAACTTTTTCACATGAAAGCAGAAGCTGCAAAGTCCGACATCTTCTACTTGTTATCCGGAACTTGGAGAACATCAGCCGAGCGGTTATTCCTTTGGATTGGAGGGTCCCGGCCGTCAAAGCTTCTAAATGTTTTGATGCGGAATTTCGAGCCTTTATCGGATGAACAAGTGATGGAGATCACTAGGCTGGTCCGATCATGCGAGCAAGCGGAGGATGCTCTCTCTCAAGGAATGGAGAAACTGCATCAGAGTCTAGCGCATACTGTTGCATTTACCGATATCTCGGTTTTTATGGAGAGTAACAATTCTCACATGAGGGAGTATATAGAGAAGCTCGAAGCACTGCAGAGCTTTGCCGGCCAGGCGGACCATCTACGGCAGCAGACATTGTTGCAAATGTCTAGGATTTTGACGACGAAACAGGCCGGAAGGGGATTGCTTGCGTTGGGGGAATATTTTCATCGGCTTCGAGCTCTTAGTTCAGTATGGTGTAATCAAACCCTTTTGTAG 1047 42.98 MGIYGAAHQVSAQANAFKDYDFPDTDLFANPIADVDARLKNKLEYVSDESMDDPLTSNQEANQIVDKVQRRLAQNREAARKSRLKKKAYVRQLETTHLKLTQLELELEKVRQQSLRKNSPIDSRISGNFETGIGTFEMQYGIWINELRVKDNQLRNALQALINDIEIRFIVESSLDHYYKLFHMKAEAAKSDIFYLLSGTWRTSAERLFLWIGGSRPSKLLNVLMRNFEPLSDEQVMEITRLVRSCEQAEDALSQGMEKLHQSLAHTVAFTDISVFMESNNSHMREYIEKLEALQSFAGQADHLRQQTLLQMSRILTTKQAGRGLLALGEYFHRLRALSSVWCNQTLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11088249 11090092 + Conep04aG0141100.1 Cone4ag1363 436341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1363 348 PANTHER TRANSCRIPTION FACTOR TGA9 48 345 - -
Cone4ag1363 348 Coils Coil 58 78 - -
Cone4ag1363 348 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1363 348 SMART brlzneu 63 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1363 348 Pfam bZIP transcription factor 67 109 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1363 348 ProSiteProfiles DOG1 domain profile. 133 345 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone4ag1363 348 Coils Coil 93 113 - -
Cone4ag1363 348 Gene3D - 66 119 - -
Cone4ag1363 348 Pfam Seed dormancy control 152 225 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone4ag1363 348 SUPERFAMILY Leucine zipper domain 67 111 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1363 348 FunFam BZIP family transcription factor 66 115 - -
Cone4ag1363 348 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1363 Cone-Chr4:11088249 Cone8ag0792 Cone-Chr8:7958365 1.06E-88 dispersed
Cone17ag1246 Cone-Chr17:8978604 Cone4ag1363 Cone-Chr4:11088249 2.91E-101 wgd
Cone20ag0480 Cone-Chr20:2568276 Cone4ag1363 Cone-Chr4:11088249 3.37E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46002 PF00111 Fer2 3.40E-12 CL0486 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1363 K14431 - vvi:100255706 365.925