Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1366 | ATGGCTTTACAAAATATTGGAGCTTCGAACCGTGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATCACCAAAATTGAAGGTAGAGGAAATGGCATCAAGACTAATGTGGTCAACATGGTGGAGATTGCGAAGGCTTTGGCTAGACCTGCCTCATACACCACAAAATATTTTGGTTGTGAGCTTGGAGCTCAGTCCAAGTTCGATGAGAAAACAGGAACCTCTCATGTGAATGGGGCTCATGATACTGTGAAGCTTGCTGGGCTTCTTGAGAACTTCATCAAGAAATATGTTCAGTGCTATGGTTGTGGCAACCCTGAAACGGATATTCTTATAACTAAGACACAGATGATCAACCTGAAATGTGCTGCTTGTGGGTTCATTTCAGATGTCGATATTAGGGATAAGCTCACCACATTTATTCTCAAGAATCCTCCAGAGCAGAAGAGAGGATCAAAAGACAAGAAGGCCATGAGGAGGGCCGAGAAGGAGCGGCTCAAGGAAGGTGAAGCTGCTGATGAGGAGCACAAAAAGCTTAAGAAGGAAACAGGGAAGAAAAAAGGCTCCTCTGTTACTCCCAAGCATGTTACTTCTAAAGTTACAAAGAAAAAGGGCAATGCCTCGGATGAGGATCAGTCCTCAGCTCACAGCCAGGGTGATGAGAATGATCTGAATGCTGCTAATAATGATGATGAGATTGAGTGGCAGACCGATACTTCCTTGGAAGCAGCTCAACAGAGAATACAGGAGCAGTTGAGTGCTGTTACTGCTGACATGGTCATGCTTTCTACAAATGAAGAGAAGCAAAAGCCAGGAAAGAAGTCTCCAGAGAGTGAGAAAAAAACCGATATTAGTAATGGAAATGGGAAAGTGAGGAATTTGATTACAACTACTACAAATACTGAACTTGATCATGAGTTGAAAGAATTCTTGAAGAAGGCCTCTTCTGCTGGGCAGCTTAAATCATTCCTGGGCTCTCTATCTGGAACTTCCCAAGAATTCATGGATGCCCTAGTTGAAGCTCTTTTTGGTGGTGTTGGGAAGGGCTTTTCCAAGGAGGTGGCAAAGAAGAAGGCATACTTAGCTGCAGCAACTCAAGGAGAGGGATCGCAGACAGCGTTATTGTGTGCTCTTGAGACCTTTTGTCTGAAGCCAAGCTCCACTGATTCTGTTAAGGAGGTGGCCCTGGTTCTGAAAACACTCTATGACTGCGATGTCCTAGAAGAGGAATTTGTTCTGGAGTGGTACCAGGCTGGCTCATGTGGCATCAACAAGAGCACCCAACTGTGGAAGAACGTCAAGCCTTTTATCGAGTGGCTCCAAAGTGCCGAGTCTGATTCATGCGAATAA | 1353 | 44.64 | MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVEIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTVKLAGLLENFIKKYVQCYGCGNPETDILITKTQMINLKCAACGFISDVDIRDKLTTFILKNPPEQKRGSKDKKAMRRAEKERLKEGEAADEEHKKLKKETGKKKGSSVTPKHVTSKVTKKKGNASDEDQSSAHSQGDENDLNAANNDDEIEWQTDTSLEAAQQRIQEQLSAVTADMVMLSTNEEKQKPGKKSPESEKKTDISNGNGKVRNLITTTTNTELDHELKEFLKKASSAGQLKSFLGSLSGTSQEFMDALVEALFGGVGKGFSKEVAKKKAYLAAATQGEGSQTALLCALETFCLKPSSTDSVKEVALVLKTLYDCDVLEEEFVLEWYQAGSCGINKSTQLWKNVKPFIEWLQSAESDSCE | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11104946 | 11107738 | - | Conep04aG0141500.1 | Cone4ag1366 | 436344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1366 | 450 | Gene3D | - | 105 | 145 | - | - | |
| Cone4ag1366 | 450 | ProSiteProfiles | W2 domain profile. | 294 | 450 | IPR003307 | GO:0005515(InterPro) | |
| Cone4ag1366 | 450 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 3 | 446 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER) | |
| Cone4ag1366 | 450 | Gene3D | - | 291 | 442 | - | - | |
| Cone4ag1366 | 450 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 98 | 133 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone4ag1366 | 450 | SMART | 542_3 | 359 | 447 | IPR003307 | GO:0005515(InterPro) | |
| Cone4ag1366 | 450 | MobiDBLite | consensus disorder prediction | 265 | 292 | - | - | |
| Cone4ag1366 | 450 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
| Cone4ag1366 | 450 | MobiDBLite | consensus disorder prediction | 203 | 218 | - | - | |
| Cone4ag1366 | 450 | CDD | W2_eIF5 | 307 | 448 | - | - | |
| Cone4ag1366 | 450 | Gene3D | - | 2 | 104 | - | - | |
| Cone4ag1366 | 450 | SMART | eIF2Bneu4 | 15 | 129 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone4ag1366 | 450 | Pfam | Domain found in IF2B/IF5 | 11 | 127 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cone4ag1366 | 450 | FunFam | Eukaryotic translation initiation factor 5 | 1 | 104 | - | - | |
| Cone4ag1366 | 450 | FunFam | Eukaryotic translation initiation factor 5 | 105 | 145 | - | - | |
| Cone4ag1366 | 450 | SUPERFAMILY | ARM repeat | 303 | 445 | IPR016024 | - | |
| Cone4ag1366 | 450 | MobiDBLite | consensus disorder prediction | 145 | 227 | - | - | |
| Cone4ag1366 | 450 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 372 | 448 | IPR003307 | GO:0005515(InterPro) | |
| Cone4ag1366 | 450 | MobiDBLite | consensus disorder prediction | 148 | 190 | - | - | |
| Cone4ag1366 | 450 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 10 | 101 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0543 | Cone-Chr16:7422316 | Cone4ag1366 | Cone-Chr4:11104946 | 2.44E-181 | dispersed | |
| Cone2ag0459 | Cone-Chr2:2454466 | Cone4ag1366 | Cone-Chr4:11104946 | 5.42E-183 | dispersed | |
| Cone4ag1366 | Cone-Chr4:11104946 | Cone7ag1565 | Cone-Chr7:10746232 | 5.92E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1366 | K03262 | - | vvi:100262554 | 613.224 |