Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1369 | ATGGGTTCGATAGACACACCGGCGGGTGAAGAGAACGGCTCTGCAACCACGAAACGCGATGGGGAACGAAAGCCTTCTACCGGTGACGGTGTAACTCTTTCTTCTGGAGAAACGACCGTAACGAGGCCAGATAAGCCGTCGGAGTCCCACGCCACGAAGAAGCGTAAGGCCAGTATGCTTCCCCTTGAGGTCGGTACTCGCGTCTTGTGCCGTTGGAGGGACGGAAAATTTCACCCGGCCAAGGTCATCGAGCGCCGCAAAATTTTCGTCGACAATCCCAATGATTACGAGTATTACGTCCACTACACTGAGTTCAATAGGAGGCTTGATGAATGGATTAAGCTGGACCAACTTGATCTTGATTCAGTTGAGACTGTTGTTGATGAGAAAGTGGAAGAGAAGGTACAGAGCTTGAAAATGACGCGTCACCAAAAGAGGAAGATAGACGAGACGCATGTAGAGGGTCATGAGGAACTCGATCCTGCCAGCCTACGAGAGCATGAGGAATTCACAAAAGTGAAAAATATAGCAGCTATAGAATATGGAAGATATGAAATTGAAACATGGTACTTCTCTCCGTTTCCACCAGAATACAATGACTGTATAAAGCTGTTCTTTTGTGAGTTCTGTCTCAATTTCATGAAGCGAAAAGAGCAACTTCAAAGGCATATGAGGAAGTGCGATCTGAAGCATCCTCCTGGTGATGAGATATACAGAAGCGAGACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAAGTTTATGCGCAGAATCTCTGTTACCTGGCAAAATTGTTTCTGGATCATAAGACCTTATATTATGATGTTGACCTTTTTCTGTTTTATGTTCTTTGTGAATGTGATGATCAGGGATGCCACATGGTTGGATATTTTTCCAAGGAAAAGCATTCAGAGGAATCCTACAATTTGGCTTGCATCCTCACCCTTCCTCCTTATCAGAGAAAAGGATATGGCAAGTTCTTAATTGCCTTTTCTTATGAACTTTCCAAGAAAGAAGGTAAGGCTGGCACGCCGGAAAGACCCCTTTCTGACCTTGGAATGTTGAGCTACAAAGGATACTGGACCCGGGTTCTTCTAGACATATTGAAGAAGCACAAGGGCAATATTTCCATCAAGGAGCTGAGTGACATGACAGCAATCAAGGCAGATGATATATTAAACACCCTTCAGGGCTTAGAATTGATTCAGTACAGAAAAGGGCAGCATGTTATCTCTGCCGATCCAAAAGTCTTGGATCGTCATCTAAAAGCTGCTGGTCGGGGCAGTCTCGAGGTTGATGCTAGCAAATTGATCTGGACTCCTTGTAAGGAACAAAGCTAA | 1344 | 44.64 | MGSIDTPAGEENGSATTKRDGERKPSTGDGVTLSSGETTVTRPDKPSESHATKKRKASMLPLEVGTRVLCRWRDGKFHPAKVIERRKIFVDNPNDYEYYVHYTEFNRRLDEWIKLDQLDLDSVETVVDEKVEEKVQSLKMTRHQKRKIDETHVEGHEELDPASLREHEEFTKVKNIAAIEYGRYEIETWYFSPFPPEYNDCIKLFFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSETLSMFEVDGKKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDQGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKAGTPERPLSDLGMLSYKGYWTRVLLDILKKHKGNISIKELSDMTAIKADDILNTLQGLELIQYRKGQHVISADPKVLDRHLKAAGRGSLEVDASKLIWTPCKEQS | 447 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11120228 | 11123840 | - | Conep04aG0141800.1 | Cone4ag1369 | 436347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1369 | 447 | CDD | CBD_MOF_like | 65 | 134 | - | - | |
| Cone4ag1369 | 447 | SMART | chromo_7 | 76 | 135 | IPR000953 | - | |
| Cone4ag1369 | 447 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Cone4ag1369 | 447 | FunFam | Histone acetyltransferase | 170 | 227 | - | - | |
| Cone4ag1369 | 447 | Pfam | RNA binding activity-knot of a chromodomain | 62 | 120 | IPR025995 | - | |
| Cone4ag1369 | 447 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
| Cone4ag1369 | 447 | CDD | NAT_SF | 283 | 341 | - | - | |
| Cone4ag1369 | 447 | Gene3D | - | 350 | 430 | IPR036388 | - | |
| Cone4ag1369 | 447 | Pfam | MYST family zinc finger domain | 173 | 227 | IPR040706 | - | |
| Cone4ag1369 | 447 | FunFam | Histone acetyltransferase | 230 | 359 | - | - | |
| Cone4ag1369 | 447 | FunFam | Histone acetyltransferase | 52 | 171 | - | - | |
| Cone4ag1369 | 447 | Gene3D | - | 230 | 442 | - | - | |
| Cone4ag1369 | 447 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 172 | 442 | IPR016181 | - | |
| Cone4ag1369 | 447 | Gene3D | - | 172 | 228 | - | - | |
| Cone4ag1369 | 447 | SUPERFAMILY | Chromo domain-like | 54 | 172 | IPR016197 | - | |
| Cone4ag1369 | 447 | FunFam | Histone acetyltransferase | 350 | 430 | - | - | |
| Cone4ag1369 | 447 | Pfam | MOZ/SAS family | 232 | 409 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Cone4ag1369 | 447 | PANTHER | HISTONE ACETYLTRANSFERASE | 34 | 444 | IPR050603 | GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER) | |
| Cone4ag1369 | 447 | ProSiteProfiles | MYST-type histone acetyltransferase (HAT) domain profile. | 171 | 442 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Cone4ag1369 | 447 | Gene3D | - | 49 | 171 | - | - | |
| Cone4ag1369 | 447 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1257 | Cone-Chr17:9051917 | Cone4ag1369 | Cone-Chr4:11120228 | 3.49E-269 | wgd | |
| Cone20ag0470 | Cone-Chr20:2477098 | Cone4ag1369 | Cone-Chr4:11120228 | 2.19E-270 | wgd | |
| Cone4ag1369 | Cone-Chr4:11120228 | Cone7ag1562 | Cone-Chr7:10733882 | 2.14E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1369 | K11308 | - | cit:102608219 | 782.326 |