Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1372 ATGCATCATCTACCACAGATTTTCACTCATGTCCGGCGGTCTAAACGCATCGATCCGAGAAGCAAAGGAAAACCGAGGCTTGAGCGTCGGAATGCTCTGAGGAACATAGATTATGACGCCGGGTCTTCCTCTTCGACGCTGGATTCACCGGAAACCCCGCACACTCGATCGCTTGAGCTGTTGAGCCAAACGAGCTTTCGGATCGAAGGAACTGAGGGCGAGTTTGATCGGCTATGTCGGAGTTTGGGCCTCTCAGGTCCCGATGACTTTGCTATTCCAACGGTGACGTGGGAGGCTAGGAAGGCCCGGTCGTCTTCGGATCGTGTAGCGAGAGCCAACTTGCTGGATAGTCTGACGGGCAAGGAAGAGGAGGACAAGGTGGAGGAAGAAGTTGAAGCTGGATTGTGTGCGAGGATTGTGGATTCTGTTATAATTGGGGATTTGACTGAGTTGACTCGGAATCAACAGGCCAAGACGAGTGAGAGTTATAGTGGTAGTGAAGGGGGAGGAGGTGGAATCAAAGGTGTTCGACCGCCGGTGCTTAAACCGCCGCCGAGTATGCGTATTCCGGTGATTGATTGTAAGAGTTCAACTTGGGACATTTGCTGGAATTTCGGTCCGGATGATGAAATACGGCCTTCACAGGGGGTCCAAGGTCGGAATAGTTCTTATTCTGAAGATGGTGATGACAGAGAAGAAGCTTTCGTACCAGCTTTCAAGGGTGAAGTCGAGCGGAATCTGGTTGGGCTTCGGAAGAGTGCTGCATTTTTGGAGTCTCCTTGTTGTTCCTTTACAACTTCAAACGATGATGATTCTTCGAGCACTACCACGGAGCCTCCGTCCAGTATTTCACCAAGTGGGAGGTTGAAGGGCACCATCACGTCCTGGGAAAAGGGTCAGCTCCTTGGCCGCGGTTCGTTTGGATCAGTATACGAAGGAATTTCTGATGGTGGAGTTTTCTTCGCCATCAAGGAAGTTTCATTGCTCGATCAAGATAGCCAAGGAAGGCAAAGTATTTCTCAGCTTGAGCAGGAGATTGCTCTTCTAAGTCGGTTTAAGCACGAGAACATAGTCAGGTATCATGGCACAGCTAAGGATGAATCAAAACTCTATATCTTTCTTGAGCTTGTAACCCAAGGGTCCCTCATGAGTCTCTATCAGAAGTATCATCTTCGGGATACCCAAGTCTCCGCTTACACAAGACAGATTCTTCATGGCTTGAAGTATCTTCATGACCAAAATATAATTCACAGGGACATCAAATGTGCAAATATTTTGGTGGATGCAAATGGATTAGTGAAGCTTGCAGATTTTGGATTGGCAAAGGCAACAAAGCTGAATGATGTTAAATCTTGTAAGGGGACTGCATTCTGGATGGCACCGGAGGTTGTTAATAGGAGGAGTCAAGGGTATGGTCTTCCAGCTGATATCTGGAGCCTTGGCTGCACAGTGTTGGAGATGTTGACCCGTCAGATTCCATATGCTGAGTGGGAATGTATGACGGCAATATATAAGATCGGACAGGGTGTGCTTCCTCATGTTCCCGATTCTCTCTCAGTAGATGCACGGGATTTCATTCGGAAGTGCCTACGAGTTAATCCAAGTGACCGCCCCACTGCTGCTCGACTATTAAACCATCCATTTGTGAAGATTCCACTTCCCACTAACTCAGGCTCAGCATCTCCTTTCAATCATGGCAGAAGGCATTAG 1710 48.25 MHHLPQIFTHVRRSKRIDPRSKGKPRLERRNALRNIDYDAGSSSSTLDSPETPHTRSLELLSQTSFRIEGTEGEFDRLCRSLGLSGPDDFAIPTVTWEARKARSSSDRVARANLLDSLTGKEEEDKVEEEVEAGLCARIVDSVIIGDLTELTRNQQAKTSESYSGSEGGGGGIKGVRPPVLKPPPSMRIPVIDCKSSTWDICWNFGPDDEIRPSQGVQGRNSSYSEDGDDREEAFVPAFKGEVERNLVGLRKSAAFLESPCCSFTTSNDDDSSSTTTEPPSSISPSGRLKGTITSWEKGQLLGRGSFGSVYEGISDGGVFFAIKEVSLLDQDSQGRQSISQLEQEIALLSRFKHENIVRYHGTAKDESKLYIFLELVTQGSLMSLYQKYHLRDTQVSAYTRQILHGLKYLHDQNIIHRDIKCANILVDANGLVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNRRSQGYGLPADIWSLGCTVLEMLTRQIPYAEWECMTAIYKIGQGVLPHVPDSLSVDARDFIRKCLRVNPSDRPTAARLLNHPFVKIPLPTNSGSASPFNHGRRH 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11134160 11138778 + Conep04aG0142100.1 Cone4ag1372 436350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1372 569 MobiDBLite consensus disorder prediction 155 188 - -
Cone4ag1372 569 SUPERFAMILY Protein kinase-like (PK-like) 295 550 IPR011009 -
Cone4ag1372 569 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524(InterPro)
Cone4ag1372 569 Gene3D Transferase(Phosphotransferase) domain 1 293 562 - -
Cone4ag1372 569 MobiDBLite consensus disorder prediction 210 231 - -
Cone4ag1372 569 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 550 IPR050538 -
Cone4ag1372 569 SMART serkin_6 296 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1372 569 MobiDBLite consensus disorder prediction 265 291 - -
Cone4ag1372 569 Pfam Protein kinase domain 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1372 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1372 569 FunFam Mitogen-activated protein kinase 1, putative, expressed 294 561 - -
Cone4ag1372 569 ProSiteProfiles Protein kinase domain profile. 296 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1372 Cone-Chr4:11134160 Cone8ag0976 Cone-Chr8:9169745 3.70E-170 dispersed
Cone7ag1553 Cone-Chr7:10688013 Cone4ag1372 Cone-Chr4:11134160 6.31E-20 dispersed
Cone4ag1372 Cone-Chr4:11134160 Cone4ag1378 Cone-Chr4:11174201 4.09E-10 proximal
Cone17ag1261 Cone-Chr17:9077026 Cone4ag1372 Cone-Chr4:11134160 2.22E-181 wgd
Cone20ag0467 Cone-Chr20:2449845 Cone4ag1372 Cone-Chr4:11134160 1.76E-177 wgd
Cone4ag1372 Cone-Chr4:11134160 Cone6ag1606 Cone-Chr6:12440854 2.21E-26 wgd
Cone4ag1372 Cone-Chr4:11134160 Cone7ag1559 Cone-Chr7:10715928 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82787 PF10699 HAP2-GCS1 2.00E-133 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1372 K13414 - rcu:8274146 677.167