Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1377 ATGTCCGATCGCGCCAACTACAATCGGAATAATAACGACCACGGCGGCACTCTGCGGAAGCGAACTTTTACAGCGGCTGAAAAAGTGGCTCCATCTTCGTCACCGATAGTTGCGCCGGTGGAAGTGATGATCAACAGCGCTGTAGGGAACATAATCTGTGGATTGCTGCGTAAATGGGTGAACTGTGGTAAAGGTTGGCGAACTCGCTGGTTTGTACTACAGGAGGACGTTTTGTCGTATTATAAAGTCCATGGACCTGACAAGATTTTGATCAATCAGGAAGCGGAGAAGGAATCAAAGGTCATCGGCGTCAAGTCGTTGAGAAAGATTTCACAGCAGCACCGTCACAGCAGCTCCTCCGATTCCGATCTCTCACCGCAAGTCCGCCGAAAGCCTTTTGGCGAAATTCATCTCAAGGTTTGTTCGATTAGAGAAAGTCGATCGGACGATCGGAAGTTCTCGATCTTTACGGGAACAAAGAAGCTGAAATTGAGGGCGGAGACAGGGGAGGATCGAGTGGCCTGGATTCAAGCATTGCAGGCTCTCAAGGAGATGTTCCTGTCACCGCCAATTAGCGGCGAGCTAACACCGCCAATAGAAACAGTTATAACCATTTCAACAGAAAAGCTGAGGCAAAGACTTGCAGAAGAAGGTGTGAGCGAGGCGGGAATTGAAGATTGCGAGCAGATAATGAAGAGCGAATTAGGCGCTCTTCAACACCACCTCGCGCTTCTCAAACAGAAGCACGGCCACCTCATTAACGCGCTGCAACGGTTACAGGTGAGCGCTATCCCGATTAGAACACTTGCCCTTTGA 816 49.75 MSDRANYNRNNNDHGGTLRKRTFTAAEKVAPSSSPIVAPVEVMINSAVGNIICGLLRKWVNCGKGWRTRWFVLQEDVLSYYKVHGPDKILINQEAEKESKVIGVKSLRKISQQHRHSSSSDSDLSPQVRRKPFGEIHLKVCSIRESRSDDRKFSIFTGTKKLKLRAETGEDRVAWIQALQALKEMFLSPPISGELTPPIETVITISTEKLRQRLAEEGVSEAGIEDCEQIMKSELGALQHHLALLKQKHGHLINALQRLQVSAIPIRTLAL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11171824 11173412 - Conep04aG0142600.1 Cone4ag1377 436355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1377 271 PANTHER SESQUIPEDALIAN 13 206 IPR045188 -
Cone4ag1377 271 SMART PH_update 50 186 IPR001849 -
Cone4ag1377 271 Gene3D - 48 186 IPR011993 -
Cone4ag1377 271 ProSiteProfiles PH domain profile. 49 184 IPR001849 -
Cone4ag1377 271 Pfam Pleckstrin homology domain 58 180 - -
Cone4ag1377 271 SUPERFAMILY PH domain-like 50 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1377 K20456 - - csv:101214552 270.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1377 Cone-Chr4:11171824 Cone8ag0379 Cone-Chr8:2276743 4.64E-39 dispersed
Cone17ag1264 Cone-Chr17:9107629 Cone4ag1377 Cone-Chr4:11171824 6.63E-84 wgd
Cone20ag0464 Cone-Chr20:2407934 Cone4ag1377 Cone-Chr4:11171824 2.66E-82 wgd
Cone4ag1377 Cone-Chr4:11171824 Cone7ag1554 Cone-Chr7:10691928 2.84E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029810 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2