Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1378 ATGGACAGGGAGGCTAAGCTTCCGGTCCCGCCTGCAAACCCAAGGGTTATCAACCGTCCCAAGGCTAAGCTTCGAAACAACGCTTCGTCCTCGTCGTCATCCTTCTATTCAACCTCTCCGCCGGACTTCCTCCGGCAATTTCAAGCCGCCTGCAAGCGTTATCGCCCTCTTGGTACAAAGCAGCCAACTAGTATAAAGCCTAAGCGCATGGTGGTTCCCCAAAAAGAGATCTCAAGTTCAGATCATCTTATGGAAGAAGCAAAGCGATCTCAAGAAGTAGATTCATCAATTCAGGGTCATGTTGTGAAGGATACAGTTGCACAAACAAAGACCACACTGAACCTCATTGGGGAAACTCGTGAAGATGTTTCAATAACACCACTATCCAATTTAGGTACCATGACCAAAAGCATTGGTCAAAGTTACATCAACCCACTAAGAGACGGACCGAAATTGACTTCTAGCTGTCATGACATTAATCTTATGCCATTGCACACAGGTTCTCAACACAATGATAAGCAGAAAAAGGTTCAGTTCTCAATTAGAAGTGATAAGACATCTGAGGGGGCCCTTGATCAAATGGCCACTGGATTAGATAACTTATCTTCTCATATGGGTTCACTTGCATTGACAGAAATGGACTGGTCAGTTGCAAATCAAGGAGAGTTATACACTATCATCAACAATGAACCAAGGCAACAGAATTTCCAGAATCTAGAATCAGATATGAATCTACGAATTGAGGGCGGGACTTCTTTCTTGGCAAAGGGAGCGCCAGCTACTCAGGATCAGATGCACCATTTTAAAAACTTTCTGAGCCAACCATATACTCAATCCTCGGTTGTTGGGCCATCATATGCGACCACAACATTCGTACACTCAACTTCAGCTCCTTTGTGTAATTCAGGAACCTATTGTTCCCATATGCTTCGAGATGGTGATTTCAATGTGAATACTCAATCTGAAATTCACAGGAAAAACGTGCAGCCATTGTCTTCTTCTCAGAAAGATATCAGTAGATTGGTGGTTAACAAGACAGACACTGTAGCCAAACCTGACGATTCTACTATTGACACCCAGACGGGAGTTAAAGAATATGACATTTATCAGGAGCAAAAGGGGAGTTCACCAAAGGAAACTAAAGCTGCTGAAAATTATTCAGTTCTTGATAATAAGTCAAATGCAGGGACAGGATATGTTACTGATGTTTCCACTATACAATCACAGGATCACTTACCAAAAATCTCAACATCAGATGTGAAGGTGAATGTTTCTAAATCTGAAAAGCTGGAGAAGCTTTATCAAAGGCTAGGCAAGATAGGTAGTGGAGGAAACAATGAAGTCCATAAAGTCATTTTATCTTATTGTACAATCTACGCTCTGAAAAAAACCAAGCTTAAAGGACGTGATTATGCCACTGCTTATGGGTTCTGCCAGGAAATGGTGTATTTAAATAAGTTGGTAGGGAAGGACAACATCATACAGCTTATAGACTATGAGGTAACAGACAAGACTTTACTCAAGGAAGTCACGATTGGCTCCATGAGTAACAAAGATGCTAGGGTCAAAGAAGATGGTTTTATATACATGGTACTGGAATATGGGAAAATTGATCTAGCTCACATGCTATCAAAGAAGTGGAAGGAAATTGATGGCTCCCATAAGACAATGGACGAAAACTGGCTTCGATTTTTCTGGCACCAAATTCTTCTAGCAGTCAACACCATCCATGAGGAACGCATTGTGCATTCTGACCTCAAGCCAGCCAATTTCCTTCTTGTCAAAGGCTCCTTAAAGCTAATTGATTTTGGTACTGCAAAAGCAATTATGAGCGACACTACTACAAATATCCAAAGGGATTCACAGGTAGGTACACTTAGTTACATGTCCCCTGAGGCATTTTTGAGTAACGAGAGTGATGAAAATGGAAACACTATCAAGTGTGGTAGGCTGTCCGATATTTGGTCCATTGGCTGCATCCTTTATCAGATGGTGTATGGAAGAACACCATTCTCGGATTACAACACATTCTGGACCAAGTTCAAAGTTGTCACCGATCCAAACCATGAAATTACTCGCATGGGACCGCAATGA 2094 41.83 MDREAKLPVPPANPRVINRPKAKLRNNASSSSSSFYSTSPPDFLRQFQAACKRYRPLGTKQPTSIKPKRMVVPQKEISSSDHLMEEAKRSQEVDSSIQGHVVKDTVAQTKTTLNLIGETREDVSITPLSNLGTMTKSIGQSYINPLRDGPKLTSSCHDINLMPLHTGSQHNDKQKKVQFSIRSDKTSEGALDQMATGLDNLSSHMGSLALTEMDWSVANQGELYTIINNEPRQQNFQNLESDMNLRIEGGTSFLAKGAPATQDQMHHFKNFLSQPYTQSSVVGPSYATTTFVHSTSAPLCNSGTYCSHMLRDGDFNVNTQSEIHRKNVQPLSSSQKDISRLVVNKTDTVAKPDDSTIDTQTGVKEYDIYQEQKGSSPKETKAAENYSVLDNKSNAGTGYVTDVSTIQSQDHLPKISTSDVKVNVSKSEKLEKLYQRLGKIGSGGNNEVHKVILSYCTIYALKKTKLKGRDYATAYGFCQEMVYLNKLVGKDNIIQLIDYEVTDKTLLKEVTIGSMSNKDARVKEDGFIYMVLEYGKIDLAHMLSKKWKEIDGSHKTMDENWLRFFWHQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGTAKAIMSDTTTNIQRDSQVGTLSYMSPEAFLSNESDENGNTIKCGRLSDIWSIGCILYQMVYGRTPFSDYNTFWTKFKVVTDPNHEITRMGPQ 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11174201 11177230 - Conep04aG0142700.1 Cone4ag1378 436356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1378 697 Gene3D Phosphorylase Kinase; domain 1 430 533 - -
Cone4ag1378 697 MobiDBLite consensus disorder prediction 23 39 - -
Cone4ag1378 697 Pfam Protein kinase domain 434 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1378 697 MobiDBLite consensus disorder prediction 1 39 - -
Cone4ag1378 697 SUPERFAMILY Protein kinase-like (PK-like) 430 686 IPR011009 -
Cone4ag1378 697 FunFam serine/threonine-protein kinase mph1 isoform X1 548 695 - -
Cone4ag1378 697 ProSiteProfiles Protein kinase domain profile. 434 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1378 697 SMART serkin_6 434 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1378 697 PANTHER MIXED LINEAGE PROTEIN KINASE 41 692 - GO:0000776(PANTHER)|GO:0004674(PANTHER)|GO:0004712(PANTHER)|GO:0005634(PANTHER)|GO:0007059(PANTHER)|GO:0007094(PANTHER)|GO:0018105(PANTHER)|GO:0033316(PANTHER)|GO:0034501(PANTHER)
Cone4ag1378 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1378 697 Gene3D Transferase(Phosphotransferase) domain 1 534 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1378 K08866 - - mdm:103401857 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1378 Cone-Chr4:11174201 Cone7ag0228 Cone-Chr7:966856 1.52E-13 dispersed
Cone4ag1372 Cone-Chr4:11134160 Cone4ag1378 Cone-Chr4:11174201 4.09E-10 proximal
Cone20ag0460 Cone-Chr20:2387780 Cone4ag1378 Cone-Chr4:11174201 1.16E-224 wgd
Cone4ag1378 Cone-Chr4:11174201 Cone7ag1553 Cone-Chr7:10688013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82788 PF02953 zf-Tim10_DDP 4.60E-17 No_clan Cone PK