Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1387 ATGGCTTTAGCCATTGATCATGACACGCTCATCAACAACCCCGACCTGTTTTACTACAGCGCCGCCACGGTAACGGCTGCAGATAGCAGCGAAGAGGGTGTCGACCATGCAGGATGCAACTGGAACGCCTGGTCTCCAGTGGTAGACTGGGCCGCCTTTCCGGGCGGCCCAGATGACTTCCACAACCTCATGATGACAGAAGAGTACTCCATGTTAAACGAAGACGTTTTATGCCATCACCAAGCTCTACAAGTACTTTCTTTGGACGAAATAGGTGGTGTTACAAGCAACTCATCTACTATCTCAGATGATTCCAGTACGGATGTGACCATGGTTAACGTTGACGATCAAGAAGATGAAGAAGAAGAAGCATCTCACGGCGAGGCCTTCATGGGGTTGAGAGTTTTCCACCTCTTGATCGCCGCCGCCGAGGCCTTTAACGGCGTCAACAAGAACCGTGAACTCACACGTGTGATATTGGTTCGGCTCAAAGAGTTGGTTTCCCACAGTACTAACAGTACCGGTGGGACCAACATAGAAAGAATCGCCGCGCATTTCACTGCGGCCTTTCAAAGTCTGTTAGAGGGAGGTGGATCCCACCACCATCCCAGTAGGGCCCTTCTCATAACAAATAGTGGGCCCCAACCAACGGACGTCCTCGCGGCGTTTCAGCTGCTACAGAACATGTCTCCTTACATCAAGTTCGGCCACTTCACGGCAAATCAGGCGATCCTAGAAGCTGTGGGTCATGAGAGGCGGGTCCACATAGTGGATTATGACATCATGGAGGGGACCCAATGGGCCTCCTTGATGCAATCCTTGGTGTCTAAGATAGACGGGTCGACGGCCCCACATTTAAGAATCACGGCTATCTTGAGAGGTGCGACCGCTAGGAAATCGATCTGGACCATTCAAGAAGTCGGGCGCCATCTAAAGGCGTTCGCGGCGTCGATAGGTCTATCTTTCTCGTTTCATCAATACAAATTAAATTCGAATGAAAAGTTTCAACCGTCTGATCTTAAATTAATTAAAGGTGAAGTATTGATAATGAATTGTATGCTAGACCTCCCACATTTTACTCACCGTGCACCCGAATCGGTTCATTCATTTTTATCTGGAGCCAAGACCCTGAACCCAAGAGTCGTTACGTTGGTCGAGGAAGAGGTACGGGGCCCAAAGGGAGATGGAAGGTTCATGGCTCGATTTATGGACACGCTGGACCATTACTCGGCTGTGTATGACTCATTGGATGTCGGGTTTCCGATGAAGAACCGAGCACGGGCTCTAGTGGAGCGGGTTTTCTTGGGTCCGAGGATTTCCGGATCATTGGCACGGATATGCGGTGAAGACTGTGGGGATGGGTCTTTTGGGGAATGGTTGAATGCGGATGGATTCAGGGGAGTTCCTTTAAGTTTCTCCAGTCATTGTCAGGCAAAGCTGTTGTTGGGTCTGTTCAATGATGGGTACCGGGTAGAGGAAGTGGGTTGTAATAAACTGGTATTGGGCTGGAAATCAAGGCCTTTGCTCTCTGCTTCGGTTTGGGCTTTGTCATCGCCCACTTCGTCGTCCGAATCCGAATTCTGA 1584 50.06 MALAIDHDTLINNPDLFYYSAATVTAADSSEEGVDHAGCNWNAWSPVVDWAAFPGGPDDFHNLMMTEEYSMLNEDVLCHHQALQVLSLDEIGGVTSNSSTISDDSSTDVTMVNVDDQEDEEEEASHGEAFMGLRVFHLLIAAAEAFNGVNKNRELTRVILVRLKELVSHSTNSTGGTNIERIAAHFTAAFQSLLEGGGSHHHPSRALLITNSGPQPTDVLAAFQLLQNMSPYIKFGHFTANQAILEAVGHERRVHIVDYDIMEGTQWASLMQSLVSKIDGSTAPHLRITAILRGATARKSIWTIQEVGRHLKAFAASIGLSFSFHQYKLNSNEKFQPSDLKLIKGEVLIMNCMLDLPHFTHRAPESVHSFLSGAKTLNPRVVTLVEEEVRGPKGDGRFMARFMDTLDHYSAVYDSLDVGFPMKNRARALVERVFLGPRISGSLARICGEDCGDGSFGEWLNADGFRGVPLSFSSHCQAKLLLGLFNDGYRVEEVGCNKLVLGWKSRPLLSASVWALSSPTSSSESEF 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11215157 11216740 + Conep04aG0143600.1 Cone4ag1387 436365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1387 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 514 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone4ag1387 527 Pfam GRAS domain family 137 514 IPR005202 -
Cone4ag1387 527 ProSiteProfiles GRAS family profile. 126 515 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1387 K27745 - - cit:102620887 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1387 Cone-Chr4:11215157 Cone8ag0041 Cone-Chr8:231173 2.63E-44 dispersed
Cone15ag0550 Cone-Chr15:2749321 Cone4ag1387 Cone-Chr4:11215157 1.51E-19 wgd
Cone17ag1270 Cone-Chr17:9151301 Cone4ag1387 Cone-Chr4:11215157 1.97E-182 wgd
Cone20ag0456 Cone-Chr20:2359046 Cone4ag1387 Cone-Chr4:11215157 3.67E-180 wgd
Cone4ag1387 Cone-Chr4:11215157 Cone6ag1617 Cone-Chr6:12490663 7.10E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1387 . . . . . . . . Blo18g00188 . Bda01g01419 Bpe02g01634 . Bma01g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053813 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46004 PF00149 Metallophos 2.80E-39 CL0163 Cone TF