Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1388 ATGTCCACCACTTCCACTGAGAAAGATGTCGGGTCGAACCCTAATGGATCCGTCCAGAAGCCCTTGCAGATTGCAAAGCGTTTAGAGAAGTTCAAAACGACAATCTTTACCCAAATGAGCAACTTAGCCATCAGACACAAAGCCATAAACCTTGGTCAAGGCTTCCCCAATTTCGATGGTCCAGACTTCGTCAAAGAAGCAGCAATCCAAGCTATCAAGGACGGGAAAAATCAATACGCTCGTGGTTATGGAGTTCCTGATCTCAACCTAGCAATTTCTGAACGGTTTCAGAAAGACACAGGACTAGTGGTGGACCCCGAGAAGGAAATCACTGTCACCTCTGGGTGCACTGAAGCAATCGCTGCAACCATACTTGGGCTAATAAATCCCGGCGATGAGGTCATCTTATTTGCTCCTTTCTATGATTCTTATGAAGCCACCCTTTCAATGGCCGGGGCCCACGTCAAAGGTATCACATTACGGCCTCCGGATTTTTCTGTCCCGATAAATGAGCTCAAAGCAACAATCTCGAAAAATACTCGAGCTATTCTGATTAATACGCCACATAATCCAACTGGGAAGATGTTTACAGAAGAAGAATTGAATAAGATCGCTTCGCTTTGTATAGAAAACGATGTGTTAGCATTTGTTGATGAGGTCTATGACAAGCTGGCTTTTGAAATAGGTCATATTTCATTAGCTTCTCTTCCGCGAATGTATGAACGGACGGTGACCATGAACTCCTTGGGGAAGACGTTCTCGTTGACAGGGTGGAAGATTGGGTGGGCTATAGCACCACCTCATCTGACATGGGGGATCAGACAAGCGCATGCTTTTTTGACATTCGCTACTTCTACTCCAATGCAGTGGGCCGCAGCTACGGCTCTTAGAGCTCCAGACTCTTACTATGAGGAGTTGAGGAGGGATTACAAGGCGAAGAAGGCTATTTTGGAAGAAGGATTGAAGAGTGTCGGATTTATAGTGTACCCGTCAAGTGGGACCTACTTCATCGTGGTGGACCACACTCCTTTCGGGATGGAAAATGATATTGAGTTTTGCGAGTATTTAATTAAGGAAGTTGGGGTCGTAGCTATACCGACCAGTGTGTTTTACTTGAATCCGGAAGAGGGTAAGAATCTTGTGAGGTTTACGTTCTGCAAAGATGAAGGGACGCTTAGGGCTGCTGTTGAGAGGATGAAGGAGAGGCTGGTGGTTAGAAAATGA 1224 45.75 MSTTSTEKDVGSNPNGSVQKPLQIAKRLEKFKTTIFTQMSNLAIRHKAINLGQGFPNFDGPDFVKEAAIQAIKDGKNQYARGYGVPDLNLAISERFQKDTGLVVDPEKEITVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAHVKGITLRPPDFSVPINELKATISKNTRAILINTPHNPTGKMFTEEELNKIASLCIENDVLAFVDEVYDKLAFEIGHISLASLPRMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGIRQAHAFLTFATSTPMQWAAATALRAPDSYYEELRRDYKAKKAILEEGLKSVGFIVYPSSGTYFIVVDHTPFGMENDIEFCEYLIKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEGTLRAAVERMKERLVVRK 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11217878 11220094 + Conep04aG0143700.1 Cone4ag1388 436366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1388 407 CDD AAT_like 49 401 - -
Cone4ag1388 407 MobiDBLite consensus disorder prediction 1 21 - -
Cone4ag1388 407 PANTHER FI04487P 25 402 IPR051326 GO:0005737(PANTHER)|GO:0016212(PANTHER)
Cone4ag1388 407 Pfam Aminotransferase class I and II 48 398 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cone4ag1388 407 SUPERFAMILY PLP-dependent transferases 23 402 IPR015424 -
Cone4ag1388 407 MobiDBLite consensus disorder prediction 1 20 - -
Cone4ag1388 407 Gene3D Aspartate Aminotransferase, domain 1 38 399 IPR015422 -
Cone4ag1388 407 Gene3D - 61 299 IPR015421 -
Cone4ag1388 407 FunFam Aminotransferase, class I/classII 61 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1388 K23977 - - mdm:114821499 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1388 Cone-Chr4:11217878 Cone6ag1582 Cone-Chr6:12324130 1.47E-44 dispersed
Cone17ag0435 Cone-Chr17:2046276 Cone4ag1388 Cone-Chr4:11217878 5.51E-89 transposed
Cone4ag1388 Cone-Chr4:11217878 Cone7ag1547 Cone-Chr7:10663220 4.00E-283 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g293 . . . Bda03g00529 . . . Bma01g02642 . . . Cma09g00806 . . . Cpe06g00641 . . . . . . . . . . . . . . . Cone4ag1388 Cone7ag1547 . . Lsi04g02378 Csa04g01815 . . . . . . . . . . . . Cmo09g00799 . . . Car09g00722 . . Bhi09g02655 . . . . . . Cla11g01524 Cam11g1584 Cec11g1613 Cco11g1614 Clacu11g1741 Cmu11g1559 Cre11g1975 . . Chy07g00661 Cme07g00869
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007070 1 2 2 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 34