Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1390 ATGTCTCTGAGCCCACCTCGTGCAAGAAACAATAGTGCCGCCAGGACATATCAACCCTATTGGTGCTTCCAATGCCAACAGGCAGTCCGTCTAGCCGCTGCTGGCCCCTCCGAGATCATTTGCCCTTGCTGTTTCGGACAATTCCTTTGTGAAATTAATGCCCCAATTAGACATAGGGACCATGCTGATTACATGAACTTTGATCCCTCCCCAGAACCCCGTTTACTCGAAGCCCTTTCTCTCATGCTCGACCCTCCACCACGCCTCTTCGATCGAAGGCTTTATGGCCGAGAAGACATGGATCTACGTCGCCCGTCATATCAGGTCCCAATATATGATCATCAATATGGAAGAAGATCTGTTTCGAGTGATGATTTTAATTTGAGATATTCTTGGGACCCAGAAAGTGATCGAAATCAAGACCGGCGTAGAACAAGGCAAAGAAGGCGTAGTTTTGATAATTTCGGAGAGAGTTCAGACCCAGAATCCAGAACATGGATTATTTTTAGCCCTGTAAATAATAATAATATACGCCCAATCAGACCTTATAATTCGCTACCGCTGGGCGTTGATTCAAGAAACTATTTTATTGGACCAGGCCTACATGAATTGATTAGTGAATTGACGGAAAATGATCGGACTGGACCACCTCCCGCACCTAATGAAGCAATCAATGGGATACCAACAGTGAAGATCATGGCAGCACATCTAAAGAACGACTCACTTTGTCCGGTCTGTAAGGAAGAGTTTGAGGTTGGTGGAGAAGCAAGAGAATTGCCTTGCAAGCATATATACCATTCGGATTGTATCGTTCCTTGGCTTCAGCTTCACAATTCTTGTCCTGTTTGCCGGAAAGAGCTGCCGGAGCGAGGCATTGGTGATGATGGTGATGGTGAAGAAGGTCGACTTAGACGGTGCCTGAGGTGGCGCCGGGTGACCTCTATGTGGCCGTTCCGTGCACGTTATCGACAAATTAATCCTCAAGGTGGTGATCGGGTTACTACTTCTATTTCTAGACCTAGAGGTGATAATTGA 1035 46.47 MSLSPPRARNNSAARTYQPYWCFQCQQAVRLAAAGPSEIICPCCFGQFLCEINAPIRHRDHADYMNFDPSPEPRLLEALSLMLDPPPRLFDRRLYGREDMDLRRPSYQVPIYDHQYGRRSVSSDDFNLRYSWDPESDRNQDRRRTRQRRRSFDNFGESSDPESRTWIIFSPVNNNNIRPIRPYNSLPLGVDSRNYFIGPGLHELISELTENDRTGPPPAPNEAINGIPTVKIMAAHLKNDSLCPVCKEEFEVGGEARELPCKHIYHSDCIVPWLQLHNSCPVCRKELPERGIGDDGDGEEGRLRRCLRWRRVTSMWPFRARYRQINPQGGDRVTTSISRPRGDN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11224883 11225917 + Conep04aG0143900.1 Cone4ag1390 436368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1390 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 288 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone4ag1390 344 SMART ring_2 243 283 IPR001841 -
Cone4ag1390 344 FunFam E3 ubiquitin-protein ligase RING1-like 207 290 - -
Cone4ag1390 344 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Cone4ag1390 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 290 IPR013083 -
Cone4ag1390 344 MobiDBLite consensus disorder prediction 130 162 - -
Cone4ag1390 344 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630(InterPro)
Cone4ag1390 344 Pfam Ring finger domain 242 284 IPR001841 -
Cone4ag1390 344 MobiDBLite consensus disorder prediction 130 157 - -
Cone4ag1390 344 CDD RING-H2_RNF126-like 243 284 - -
Cone4ag1390 344 SUPERFAMILY RING/U-box 223 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1390 K11982 - - mtr:11413821 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0656 Cone-Chr19:5594012 Cone4ag1390 Cone-Chr4:11224883 8.57E-48 dispersed
Cone4ag1390 Cone-Chr4:11224883 Cone5ag1128 Cone-Chr5:5050862 1.72E-30 dispersed
Cone4ag1390 Cone-Chr4:11224883 Cone5ag0646 Cone-Chr5:2757199 7.90E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35