Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1391 ATGGATGAAGAGGTTTATACCAAGGAAGAACTGCTTGCATATTTAAAGGAGCTTCAAATTGATCTTTCCAAGTATGAACATCCTGCCGTTTTGACAGTTGAAGCTCAGGAAAAATATGTTGGCAACATAGGGGGTGGCCTCAGTAAAAATTTGTTCTTGAAGGACAAGAAGAATAGGTACTATGTCGTTTCTGCCCTCGCAGACACTAAAGTTGACCTGAAAGTTCTATCAACCAGGCTTGGTTTGGGGAAAGGAGGTCTGAGAATGGCTCCTGAAGAAGCATTAGGTGAAAAACTTAAGGTGTCACTTGGTTGTGTTACTCCATTTGCATTTATCAATAGATCAGCAAGGAATGCATTCACTTGTGATAGAAGATTTAAAAACCAAAAGTGTTACTTTTTCCACCCATTGTCAAATGAGATGACAATCTCTATTCATGCTTGTGATATTGACAAATTTCTTAAATCGATTGGGAGAGACCCCTCTTATGTTGACCTGGAGGCTAATCCGACAATAGGGAAGGATCAACCTCCTGATCTTGCTGCCCTTGTCCCATCAGGGTCTACTAGTTTGTCGGAATCTAATGAGAAAGCAGCTCCAATAGAAACTAGTTCCACAAATCATGGATCGGAGGACAGTATGTCCAAGACAGTGACAGCGAGTAAAGTCAAGAAATCAACTAATTCGCTGATTCGTAAGGACAAAACCCATTAA 714 40.62 MDEEVYTKEELLAYLKELQIDLSKYEHPAVLTVEAQEKYVGNIGGGLSKNLFLKDKKNRYYVVSALADTKVDLKVLSTRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFAFINRSARNAFTCDRRFKNQKCYFFHPLSNEMTISIHACDIDKFLKSIGRDPSYVDLEANPTIGKDQPPDLAALVPSGSTSLSESNEKAAPIETSSTNHGSEDSMSKTVTASKVKKSTNSLIRKDKTH 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11227212 11229903 - Conep04aG0144000.1 Cone4ag1391 436369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1391 237 SUPERFAMILY YbaK/ProRS associated domain 6 166 IPR036754 GO:0002161(InterPro)
Cone4ag1391 237 MobiDBLite consensus disorder prediction 183 226 - -
Cone4ag1391 237 CDD PrdX_deacylase 8 164 - -
Cone4ag1391 237 MobiDBLite consensus disorder prediction 169 237 - -
Cone4ag1391 237 Pfam Aminoacyl-tRNA editing domain 27 152 IPR007214 GO:0002161(InterPro)
Cone4ag1391 237 Gene3D - 2 173 IPR036754 GO:0002161(InterPro)
Cone4ag1391 237 FunFam Putative prolyl-tRNA synthetase 3 171 - -
Cone4ag1391 237 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 6 235 IPR040285 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1391 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1391 Cone-Chr4:11227212 Cone7ag1545 Cone-Chr7:10654158 1.40E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34