Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1405 ATGGACGAGTCCGCTCTGCAACTCCTCTCCGAAATCGGCACCCAACTTGGTCAGTTGACTCGTCCAAGCAAGGATTCGATTATCAAATCGCTCCGACAAGTTGCAAGTGCTTTGGCACGGCTGGAGCAGCCTTCACCAGGTGTTGCGGATAAGTCGGAGGTGATGAAAAGATTAAAGAATTGCATAAAGCCCCTGAGAAAATCCATAATACATGGTTTGCTTCAGCATAAAGATAAGGACGTTAGACTTCTACTGGCCATGTGTGTCAGTGAGATTTTTCGGGTTATGGCACCTGAACCTCCGTTTGAAGACAAATATCTGAGGGATATTTTTAAACTCATTTTGAGCACCTTTGCTGAACTAGATGATACCACGAGCCCATTATTTTCACGAAGGGTTAAAATATTAGAGACTGTTGCGAGATGCAAATGTTGTGTGATAATGCTTGACATTGAATGCAATGATTTGGTTCTTGAAATGTTCAATACATTTTTTTCAGTTGTGAGGGATAATCATCAGTGGAGTTTGATGAATGATGCCTTATCTATAATGACACATATTCTGAATGAGGATATCTCTCAGCCTCTCTTAGATATGATTTTGCATAACCTTATAAAGGATGTAAAGCTTGCAGTTTCTGTAATTGAAAGTTGTGCTGAAAAGCTTGAACCCTTTGTTTGTGGGTTTATAACGTCATGTATCTTAGAAAGAGATAATGTGGGGAGTGAGCTTAAAGAATATTACCATGACATCATCTTTAAAGTTTTCCAATGTGCTCCTCATATTCTTATTGCTGTCATTCCGAATTTGACTCAAGAGCTTCTGACTGATCAGGTTGATGTCAGAATTAAAGCTGTTAACATAATTGGCAAACTCTTAGCACTGCCTGAAAATCATATTGCGGAAGAATATAGTGACCTTTTCCTGGAGTTCTTGAAAAGATTTTCTGATAAATCTGTGGACGTCAGAATCTGTGCCATACAGTGTGCTAAGGCTTGCTATATTGCCAATCCTTCTAAGAGAGAATCACAGGAAGTTCTAGCTGCACTTGAAGGAAGACTTCTGGACTTTGATGAGAGAGTGAGAATTCAGGCCGTGGTAGTTGCTTGTGATCTTGCCAGGTCAACTCTAAAATATGTTCCACCGACCCTAGTATCTCAAGCTGCTGAGAGACTTCGAGACAAGAAGATATCTGTTAGAAAGAAGGCCTTGCAGAAGTTGCTCGAAGTTTACCGAGATTATTGTAACAAATGTTCTGAAGGCCACTTGACGTTAGGCAATGATTTTGAACAGATTCCATGTAAAATCTTGATGCTTTGTTATGATAAAGATTGTAAGGAGTTTAGGTCCCAGAGCATGGAACTCGTTTTTGCACAGGATTTATTTCCAGCTCTTCTTTCAGTTGAAGAAAGGACTAGACACTGGATCCATTTGTTTTCACTTTTCTCCCCCCTTCATGAGAAGGCACTGAGCTCTATTTTATCCCACAAACGAAGGTTGCAAATTGAGATGCAAAACTATTTGACTCTAAGGAGGAAAGAGAAAGAGAACCTTTCTGAAGAGATGGATAACAGAATTAAAACTTCATTTGTCAAAATGGCAGCCTCCTTTCCTGATCCTATCAAAGCACAGGAGTGCTTTCATAAACTAAACCAACTGAAAGATAATAGCATTTTTAACTCTCTGGCACTATTACTCGAGGAACATGGAATGGTTCAATCACGGAATATTAGAGATAAATTTTTGCATATCTTAGGAGGTAGACATCCTCATTTTGAGTTCCTACAATCACTCACCTCAAAGTGTTCATACAATATTTTCAGCTCAGAGCTTGTACGCAGTATATTAGATCACATTTCCAGTAACTGTTTGGGGAATAAGGACTCGGTGTCTTCTTCAGTTAAACTTCTTTTGGCTGTTATCAACATTTTCCCCTCTCTCATGAGAGGGTCAGAAGGGCAGGTTCAAACATTGTTAGAGGATAGCAACCAAATTGATGATAAGTTGATTGAAGCGTTATCAAAGGCAGGCCCTTATATGTCTATTAAATTCAGTGATATGTACCCTCTTCTAGAGAGATTGTGTCTAGAGGGAACTCGCGCTCAGTCTAAGCATGCTGTTTCTGCAATTGCTTCTTTAGTTAACACTTCTGAGCAATTTGTCTTCTCCAAGTTATGCAAGGTACTTATGGAGGCTCTTCATAATGGAAGGAATGTTCCTACAGTGTTGCAGTCTCTAGGATGCATGGCACAGTATTCTGTTTCGACATTTGATTCTCAAGATGGAGAGATCACGCGTTACATATACAAGAATATATTTCATGTGGATTCATCAGATGATCTGAATGCATTCAACAATACTGCAATTTGTAGCAATTCTTGCAAATTGAAGATTTATGGCCTTAAAACACTTGTCAAGAGTTTCTTACCACATCAGGGAGCTCATAGTACAAGGAAAGTTGATGAATTGCTGCACATTTTACTAAGATTGATGGAGGATGGTGGAACTTTTATTGGATTCATGTCTTGTGAAAATGAAAAGGCTTATATAAGATTAGCTGCTGCTAAGTCAGTTCTCCAGCTTTCCAGAAGATGGGATTTGCTTATTACTCCAGAGCTTTTTCGCTTTACAATCATGACAGCTAAGGATTCCTCTTCTTTTGTTAGAAGGTTATATATAGATAAAACACACAAGCTGTTGAAGGAACATGCTATACCCAATAGATATGCTTGTGCGTTTGCTTTGACATTCTCAGACTGCCTCAATGATCTGCAAGATGATTCATTGAAATACATGACAGAATTTATCAAAGAGAACAGTAGAGAAGCACGAATCCATCAAACTTCTGCGGTTCAAGGAGGATCAATCACCGTCTTCCCAGCATACATAGTGGTCTTCCTAACCTATCTTCTAGCTCATGATACAGGCTTCCCAGCTGTAGATTGTCAGGATGAAGAACTATTTGCACGCCTTTGCAGCCCGCTTTTATTCGTATTACAGGCATTAGTCAATGCTTCTACTGTCGATGGCAACATGTATGCGGTTAACGAGGCTGTATCTAGTTTACTTAGCATTTTTCGTGCCATTAGAAGGGCTGAGGATGCTGTTTCTGTTCAAAAGACTCCTAATCTACACCTTCTAGCAGACATTGGATTCTCCTTTGTAACTGCATTAAAAATTACTGGTGTCTCTGCATCTCGAGCTCCCAGGCAGATTTTATTGCCATCATCTTTATACAGGGCTAATTCAAAGTGTTCTACTACATCTTCCTTTGATGAATCTCTTACCAAAAGAATCATACATTTTTTTATGTCACAAACTATTTTGCCTGTTAACACACTTCCCAAGCGTGACCGGAAGAACCAAGAGGGTGTCATACAATCTAATGTTAATAAGGAGGCCGGGTCATTGAACATGGTTTGTTTGAAGCAAGTTGAAAATCAAAAGTACTTGAACCAAAAAAGTATTGTTGGGCATAGGCGAAAACGGGCTGTCTCTCCAAGTGGATTGGGCTTAGTTGCATTTCATGAATGTTCTACAATCAGCCACCAAAAGTGTCCATCAAGAAAATGTGAACCAGGTTTGGAGAACAAACAATCTCTGCAACTCTCATCATGTGATTCTGTTACTACAAAACCTTCTTTAACAGAATCAAATTCAAGCTTGAAGACCATATATGATTGCAGGGAAGTTGAGCTAGTATGCTTGGGTAGCGAGAGCTTGAAGACTTCAACTAGTGTTTTGTTGGAGGAAGAGGATGTAATCTTGCTGGAGGAATCAGAATCAGAGATGTGTTTTTTGCCGCATCAGAAAAATTCTCAAAGTATCCCCCCAAAATCCTTTGATAAAAAAGGATATGTTGCTACCCAATGGGAAAAAACCTTCTCATTTGATGAGGGGGTAGAAACGGCTGATCCAATGGCTCTCCAACCTGCTGCAGGAAAGGCAAAAAAGGGCTGGAAAGCTTCTACGAAAACTTCTGCACATGAAGTTATAGATGTCTATGAGAATCCTATTCTAAGGAGAAGTCAGAGACATAAAGCTTGA 4047 39.54 MDESALQLLSEIGTQLGQLTRPSKDSIIKSLRQVASALARLEQPSPGVADKSEVMKRLKNCIKPLRKSIIHGLLQHKDKDVRLLLAMCVSEIFRVMAPEPPFEDKYLRDIFKLILSTFAELDDTTSPLFSRRVKILETVARCKCCVIMLDIECNDLVLEMFNTFFSVVRDNHQWSLMNDALSIMTHILNEDISQPLLDMILHNLIKDVKLAVSVIESCAEKLEPFVCGFITSCILERDNVGSELKEYYHDIIFKVFQCAPHILIAVIPNLTQELLTDQVDVRIKAVNIIGKLLALPENHIAEEYSDLFLEFLKRFSDKSVDVRICAIQCAKACYIANPSKRESQEVLAALEGRLLDFDERVRIQAVVVACDLARSTLKYVPPTLVSQAAERLRDKKISVRKKALQKLLEVYRDYCNKCSEGHLTLGNDFEQIPCKILMLCYDKDCKEFRSQSMELVFAQDLFPALLSVEERTRHWIHLFSLFSPLHEKALSSILSHKRRLQIEMQNYLTLRRKEKENLSEEMDNRIKTSFVKMAASFPDPIKAQECFHKLNQLKDNSIFNSLALLLEEHGMVQSRNIRDKFLHILGGRHPHFEFLQSLTSKCSYNIFSSELVRSILDHISSNCLGNKDSVSSSVKLLLAVINIFPSLMRGSEGQVQTLLEDSNQIDDKLIEALSKAGPYMSIKFSDMYPLLERLCLEGTRAQSKHAVSAIASLVNTSEQFVFSKLCKVLMEALHNGRNVPTVLQSLGCMAQYSVSTFDSQDGEITRYIYKNIFHVDSSDDLNAFNNTAICSNSCKLKIYGLKTLVKSFLPHQGAHSTRKVDELLHILLRLMEDGGTFIGFMSCENEKAYIRLAAAKSVLQLSRRWDLLITPELFRFTIMTAKDSSSFVRRLYIDKTHKLLKEHAIPNRYACAFALTFSDCLNDLQDDSLKYMTEFIKENSREARIHQTSAVQGGSITVFPAYIVVFLTYLLAHDTGFPAVDCQDEELFARLCSPLLFVLQALVNASTVDGNMYAVNEAVSSLLSIFRAIRRAEDAVSVQKTPNLHLLADIGFSFVTALKITGVSASRAPRQILLPSSLYRANSKCSTTSSFDESLTKRIIHFFMSQTILPVNTLPKRDRKNQEGVIQSNVNKEAGSLNMVCLKQVENQKYLNQKSIVGHRRKRAVSPSGLGLVAFHECSTISHQKCPSRKCEPGLENKQSLQLSSCDSVTTKPSLTESNSSLKTIYDCREVELVCLGSESLKTSTSVLLEEEDVILLEESESEMCFLPHQKNSQSIPPKSFDKKGYVATQWEKTFSFDEGVETADPMALQPAAGKAKKGWKASTKTSAHEVIDVYENPILRRSQRHKA 1348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11268018 11278781 + Conep04aG0145400.1 Cone4ag1405 436383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1405 1348 Gene3D - 413 942 IPR011989 -
Cone4ag1405 1348 SUPERFAMILY ARM repeat 55 917 IPR016024 -
Cone4ag1405 1348 CDD PDS5 27 645 - -
Cone4ag1405 1348 Coils Coil 497 517 - -
Cone4ag1405 1348 Gene3D - 170 412 IPR011989 -
Cone4ag1405 1348 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 3 1309 IPR039776 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0007064(PANTHER)|GO:0007064(InterPro)
Cone4ag1405 1348 Pfam Sister chromatid cohesion protein PDS5 protein 25 1080 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1405 K11267 - - rcu:8274115 1519.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0064 Cone-Chr1:318142 Cone4ag1405 Cone-Chr4:11268018 1.56E-202 dispersed
Cone4ag1405 Cone-Chr4:11268018 Cone4ag1751 Cone-Chr4:12870082 3.23E-34 dispersed
Cone4ag1405 Cone-Chr4:11268018 Cone5ag1796 Cone-Chr5:12736673 1.92E-208 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36