Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1410 ATGTCTCTGTCGGCTTCAAACGCCATGACCACCATAGCTACCGCCGCGGCTCTCTCTCTACCTATCTCTCTTTGTAAATCTTCTAAGCTTAGCTCCAAAAAGGGTATGAGAGCAGGATTTAGGGTATTTTCCGTACTGGGGGAGGAAGGAACTTCAATAGAGAAAAGGAGTACTTGGGGCCCGCTTTTTGACGTGGAAGATCCAAGGTCTAAAGTTCCACAAAAAGGGAAATTCTTGGATGTAAATCAAGCTTTGGAAGTGGCTAGATATGATATTCAGTATTGTGATTGGCGGGCTCGGCAAGATGTGCTTACAATCATGCTTCTTCATGAAAAGGTTGTGGAAGTTCTAAATCCTCTAGCTCGTGAGTTCAAGTCTATTGGTACTGTGAAGAAGGAACTAGCAGATTTACAAGAAGATTTAGAACAAGCACACAAACAGGTTCATATATCAGAAGCAAGGGTCGCAACTGCTTTAGATAAACTAGCTTACATGGAAACACTGGTAAATGATAGGCTGTTACAAGATAGGAAAACAACAGAACCTGATTCTTCCCTTTCTCCCAGTACTTCTACACAATCTCCACCCAATGAAAATCATAGGTCGCCTCAGAGAAACTTGAACGTATCTGGTCCTGTTCAACCATACAATCCTCGGTTGAAGAACTTCTGGTATCCTGTTACTTTCTCCACTGACCTGAAGGATGATACCATGGTCCCAATAGATTGTTTTGAGGAGCCATGGGTTTTGTTCCGTGGAAAGGATGGAAGACCCGGCTGTGTACAGAACACTTGTGCACATAGAGCATGCCCTCTTCATCTTGGTTCCGTAAATGAGGGTCGAATCCAGTGCCCGTATCATGGGTGGGAATATTCAACGGATGGAAACTGTGAGAAAATGCCATCCACAAAATTTGTCAGTGTGAAGATAAAGTCATTGCCCTGCTTCGAGCAAGAAGGGATGATCTGGATTTGGCCAGGTAATGACCCTCCAGCGGCCGAGATTCCTTCTCTACAGCCTCCTCCTGGATTCCAAGTTCATGCTGAGCTCATCATGGAACTTCCAGTCGAACATGGGTTGCTTCTAGATAATCTTCTCGACCTTGCTCATGCCCCTTTCACTCACACTTCCACCTTCGCCAAGGGATGGACTGTTCCCAGCTTGGTGAAGTTTTTGACACCAGCATCAGGCCTCCAAGGATACTGGGATCCATATCCAATAGACATGGAATTTAGACCACCTTGTATAGTACTATCAACTATAGGCATCTCTAAGCCCGGAAAGCTAGAAGGACAAAGTACTAAACAGTGTTCTACTCACCTTCACCAACTTCACGTCTGCTTGCCTTCATCCAGACAGAAAACAAGGTTATTGTACAGAATGTCACTAGATTTCGCACCCATTCTGAAGCATATTCCTTTTATGCATTATCTATGGAGGCATTTTGCAGAACAGGTCTTAAATGAGGACCTGAGGCTTGTGCTCGGTCAGCAAGAGCGTATGATCAACGGTGCAAATATCTGGAACATGCCGGTTTCATATGACAAGCTGGGAGTAAGGTATAGGCTATGGAGAAATGCTGTGGATAAAGGCGCTAAGCAACTTCCTTTCACCAAACCGACCTGA 1626 44.77 MSLSASNAMTTIATAAALSLPISLCKSSKLSSKKGMRAGFRVFSVLGEEGTSIEKRSTWGPLFDVEDPRSKVPQKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTVKKELADLQEDLEQAHKQVHISEARVATALDKLAYMETLVNDRLLQDRKTTEPDSSLSPSTSTQSPPNENHRSPQRNLNVSGPVQPYNPRLKNFWYPVTFSTDLKDDTMVPIDCFEEPWVLFRGKDGRPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGNCEKMPSTKFVSVKIKSLPCFEQEGMIWIWPGNDPPAAEIPSLQPPPGFQVHAELIMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWTVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCIVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPSSRQKTRLLYRMSLDFAPILKHIPFMHYLWRHFAEQVLNEDLRLVLGQQERMINGANIWNMPVSYDKLGVRYRLWRNAVDKGAKQLPFTKPT 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11299050 11301704 + Conep04aG0146000.1 Cone4ag1410 436388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1410 541 Gene3D - 342 534 - -
Cone4ag1410 541 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 224 324 IPR017941 GO:0051537(InterPro)
Cone4ag1410 541 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 111 527 IPR050584 GO:0005737(PANTHER)|GO:0016491(PANTHER)
Cone4ag1410 541 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 265 287 IPR015881 GO:0005506(InterPro)|GO:0051537(InterPro)
Cone4ag1410 541 MobiDBLite consensus disorder prediction 173 212 - -
Cone4ag1410 541 Gene3D - 218 340 IPR036922 GO:0051537(InterPro)
Cone4ag1410 541 CDD Rieske_RO_Alpha_Cao 207 333 - -
Cone4ag1410 541 Pfam Rieske [2Fe-2S] domain 224 305 IPR017941 GO:0051537(InterPro)
Cone4ag1410 541 SUPERFAMILY ISP domain 219 329 IPR036922 GO:0051537(InterPro)
Cone4ag1410 541 MobiDBLite consensus disorder prediction 180 212 - -
Cone4ag1410 541 Coils Coil 127 154 - -
Cone4ag1410 541 Pfam Pheophorbide a oxygenase 411 504 IPR013626 GO:0010277(InterPro)
Cone4ag1410 541 SUPERFAMILY Bet v1-like 320 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1410 K13600 - - csv:101205768 922.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1410 Cone-Chr4:11299050 Cone7ag1650 Cone-Chr7:11123510 3.19E-29 dispersed
Cone4ag1410 Cone-Chr4:11299050 Cone7ag1528 Cone-Chr7:10588615 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41