Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1412 ATGGCTGCGACTTTCACCGGCGACGAAACAGCTCCCTTCTTCGGTTTTCTCGGTGCCGCCGCTGCTCTCGTCTTTTCCTGCATGGGTGCAGCTTATGGGACTGCAAAGAGTGGGGTGGGGGTGGCCTCCATGGGAGTAATGAGGCCAGAGCTTGTGATGAAGTCTATTGTTCCAGTGGTTATGGCTGGAGTTTTGGGTATATATGGGTTGATCATAGCAGTTATAATTAGTACTGGAATAAACCCAAAAGCGAAACCTTACTATCTGTTTGATGGTTATGCTCATTTGTCCTCTGGTCTTTCCTGTGGACTTGCCGGCCTCTCCGCCGGAATGGCCATTGGGATTGTTGGTGATGCTGGAGTCCGGGCTAATGCTCAGCAGCCTAAGCTGTTTGTTGGAATGATTCTGATCCTCATCTTTGCTGAAGCTCTTGCGCTATATGGTCTCATTGTGGGCATCATACTCTCTTCCCGAGCTGGCCAATCCCGTGCCGATTAA 498 50.4 MAATFTGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLSCGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11305015 11306662 + Conep04aG0146200.1 Cone4ag1412 436390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1412 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cone4ag1412 165 Gene3D - 11 162 IPR035921 -
Cone4ag1412 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cone4ag1412 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cone4ag1412 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
Cone4ag1412 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Cone4ag1412 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cone4ag1412 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone4ag1412 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1193 Cone-Chr12:9395083 Cone4ag1412 Cone-Chr4:11305015 9.09E-95 dispersed
Cone1ag0313 Cone-Chr1:2399176 Cone4ag1412 Cone-Chr4:11305015 5.55E-37 dispersed
Cone20ag0095 Cone-Chr20:434877 Cone4ag1412 Cone-Chr4:11305015 2.05E-93 dispersed
Cone4ag1412 Cone-Chr4:11305015 Cone8ag0837 Cone-Chr8:8391216 2.37E-93 dispersed
Cone4ag1412 Cone-Chr4:11305015 Cone17ag1386 Cone-Chr17:9600297 1.59E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1412 K02155 - zma:100282817 288.5