Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1414 ATGCATTGTGTTTCTTGTGTTTTAGGTTTGGACACTGTAAGAAGCTGGCCCCAGAGTCAGGACCCTCCAGTGACTTCAGCGAAAATCGATGCAAGCGAACAAGCAAATGGAGCACTTGCAACTGAATTTGAAATCAGGGGTTTCCCCACTATTAAGATTCTTAGAAATGGAGGGAAGATTAGTCAAGAGTACAAGGGTCCCCGTGATTCAGAAGGTGTTGCTGACTTTTTGAAGAGACAAACTGGACCTGCTTCTGCTGAAATCAAAACTGTTGAAGATGCCGGAAGTCTGGTTTCGGACAAGAAGATTGTTGTTGCCCCGTTGTTTCTGAACTTCAGTAATGAGGACACTGGAGAGTTCAAATCCAAGTATCACAAAATTGCTGAGCAATACAAAGGAGAGGGTCTAAGCTTTCTGATTGGAGAAATTGAGGCCAGCCAAGTTGCCCTCAAGTTTTTTGGACTTAAAGATGATCAGGATGGAAATGTCCTGGCATTCCGAAAGTCAGAACCTATCCCCGAGCATAATGATGAACCCGTGAGAGTAGTTGTTGCTGACAGTCTCCAGGATGTAGTTTTCAAGTCTGGAAAAAATGTTCTTCTAGAATTTTATGCTCCTTGGTGCGGCCACTGCAAGAACCTTGCTCCCATCCTAGATGAAGTTGCCATCTCGCTTAAAAGTGATCCTGATATCATCATTGCTAAGCTTGATGCCACGGCAAATGACTACCTGATCAGCACTTTTGACGTACAGGGCTTCCCTACCTTGTGCTTCAAATCAGCAAGCGGAAAGTTGTTGCAGTATGAAGGGGGTAGAACTAAAAAAGACATCATAGACTTCATTGAAAAGAATTGGGATAAGGCTGCTGAGAAAGATTCGAAGCCAGGAGATGATCGGAAGGAAGATTCCGAAGCCAAGGACGAGCTCTAA 930 44.19 MHCVSCVLGLDTVRSWPQSQDPPVTSAKIDASEQANGALATEFEIRGFPTIKILRNGGKISQEYKGPRDSEGVADFLKRQTGPASAEIKTVEDAGSLVSDKKIVVAPLFLNFSNEDTGEFKSKYHKIAEQYKGEGLSFLIGEIEASQVALKFFGLKDDQDGNVLAFRKSEPIPEHNDEPVRVVVADSLQDVVFKSGKNVLLEFYAPWCGHCKNLAPILDEVAISLKSDPDIIIAKLDATANDYLISTFDVQGFPTLCFKSASGKLLQYEGGRTKKDIIDFIEKNWDKAAEKDSKPGDDRKEDSEAKDEL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11313154 11315176 - Conep04aG0146500.1 Cone4ag1414 436392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1414 309 SUPERFAMILY Thioredoxin-like 3 83 IPR036249 -
Cone4ag1414 309 CDD PDI_a_PDI_a'_C 179 281 - -
Cone4ag1414 309 Gene3D Glutaredoxin 3 75 - -
Cone4ag1414 309 Gene3D Glutaredoxin 76 166 - -
Cone4ag1414 309 CDD PDI_a_family 21 77 - -
Cone4ag1414 309 Gene3D Glutaredoxin 167 305 - -
Cone4ag1414 309 Pfam Thioredoxin-like domain 37 159 - -
Cone4ag1414 309 SUPERFAMILY Thioredoxin-like 174 291 IPR036249 -
Cone4ag1414 309 MobiDBLite consensus disorder prediction 288 309 - -
Cone4ag1414 309 CDD PDI_b'_family 95 159 - -
Cone4ag1414 309 PRINTS Thioredoxin family signature 249 260 - -
Cone4ag1414 309 PRINTS Thioredoxin family signature 199 207 - -
Cone4ag1414 309 PRINTS Thioredoxin family signature 207 216 - -
Cone4ag1414 309 PANTHER PROTEIN DISULFIDE ISOMERASE 19 120 - GO:0003756(PANTHER)|GO:0005783(PANTHER)|GO:0006457(PANTHER)|GO:0034976(PANTHER)
Cone4ag1414 309 Pfam Thioredoxin 181 283 IPR013766 -
Cone4ag1414 309 NCBIfam protein disulfide-isomerase domain 184 284 IPR005788 GO:0003756(InterPro)
Cone4ag1414 309 ProSitePatterns Thioredoxin family active site. 200 218 IPR017937 -
Cone4ag1414 309 ProSiteProfiles Thioredoxin domain profile. 143 286 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1414 K09580 - - gmx:100170705 261.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1414 Cone-Chr4:11313154 Cone5ag1229 Cone-Chr5:5661488 4.53E-24 dispersed
Cone17ag1287 Cone-Chr17:9223963 Cone4ag1414 Cone-Chr4:11313154 3.19E-109 wgd
Cone20ag0440 Cone-Chr20:2221356 Cone4ag1414 Cone-Chr4:11313154 4.71E-103 wgd
Cone4ag1414 Cone-Chr4:11313154 Cone7ag1524 Cone-Chr7:10577119 1.57E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48