Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1415 ATGGGCTGTGGAGGATCCAAGGTCGATGAGCTTCAACTGGTGACTCTTTGCCGAGAGCGCAAGGAGTTTCTCAAAGCCGCTTCACAGCAACGCTACGCTTTCGCCGCTTCCCATGTTTCTTACTTCAGGTCGCTTGAACACATAGGCGACGCTCTTCGGAAATTCGTCGACGAGGAGATCGTGATCGCCGGCCTTGGATCGTCCTCCGCCCCTGGCTCCCCTGTTCTCACATTGCCATCGGAGGAAGGGAAGAGGAAGAAACCGAAAACGGCGGGTGGGAAAAACAAGAATCACAACTCGTCGACGTCTTCCACCTCGATTTCTCATTCCGTTTCCATTTCTGAGGAGCATTTCCGTGATCAGGGGACGGCCAAGGATATTGAGGAATCTCACTTACATCTTTCATCTGGATCCGAGTTCGATTTCGAAGCAGGCTCCCCTTCTGAGCACATTCACGCTGTGGATAGTCCAGAAGAACAGGACTATCCTGCTCCTTACGCTTACCCCCCTGGAGAGTACTGGGGCCCTCCTCCTGGGGCTAATAACACTTATGCCTACTACATGAAAAAGTCAGCCACACCAGCAAAGAGGATGGTCTATGAAGAACCAGAAAGATACTCTGCCTCATACGGGCAATGGCCTGATTCATCTAACAACTATCCTGCCTATTCGGGCTATCCGCAATACGGAAATGGTGGGTCCTATGGGTTTGGGATGGGTTCCCCATCCCAAAATTATCAATATAACCAGCACCAACCTAGCCCTCCTGCTCCTCCTCCAGCTCCACCTTCACCACCAAGGGTTTCCCCTTGGGATTATATTAATGTTTTTGAAAACTATAATTATGATAACCCGGGTTTTTATGCACGGAGTGGACAAGGATACGGGTCTGATGCGAGTAGCCCTGATTCAAATGAGGTAAGGATGAGAGAGGGAATTCCAGATTTGGAAGATGAAACAGAGCATGAAGAGCTGAAAGAAGCTCACAGGGAGAGGAAGAAATTGAATGGGGATCATTTGACGGATAAGTACGGAAATTTAGGTGAGGGAACGTCAAAGGATGTCCCATCACAGAGCAGGGAGGAAAGTTCAAAGGCGGTGCCGCCGATGCAGAATAGTGACAGCTCAATGTCAGGTGAAGGAAAGGGAGTAACTAGCAGTCCGGAAACTATTGTGCTGGAAACCTTTGAAGAGGGGTCTGTGTGGAAGAAGGGGGTGAGTTTTGAAGTTGAAGAGTCTTCCATTTTGGATGTTGAATCTTCTAAGCCGAGTAGCTTTTCTGCATCTGGTCCTGGTACACGGGATTCTACTATGCCAAGTAGCTTAACCACATTGTCTGCGCATGGTATAAGAGACCTTCCAGAGGTTGTCAAGGAAATACGTGATGAATTTGATGCTGCTTCTAGCTATGGGAAAGAGGTGGCAATGTTGCTTGAGGTGGGGAAGTTGCCTTATCAATCTAAGACTACTGCACTTAAAGTGATTTTTGCAAGGATCCTGTATCTGGTGGCACCTTCAATGCTATCTTCTCCGCCATCAAGGTCAACAGTTCGGTTGGATGTTAGAACAATGAAGATGGGAAAAGAATACTCTGAATTTGGGGACTCCAGGAGTGAATTCAGTGCTGGAAACCTTTCATCAACTTTGGAGAAACTTTATGCATGGGAGAAGAAACTGTACAAGGAAGTCAAGGATGAAGAAAGGCTGCGTCTTATTTATGAAAAGGAGTGCAAGCGACTCAAAACATTAGATGACCGAGGAGCGGATTCCAGTAAAATTGATGCCTCTCAAGCTTCAGTAAGAAATTTACTGACAAAAATCGATGTTTGCATTAGAGCTGTTGATGCTATATCAAGCAAGATACATAAGTTGAGAGATGAAGAATTGGAGCCACAGCTGACTAAACTGATTCACGGATTGATAAGGATGTGGAAATCCATGCTCAAATGCCACCAGAAACAGTTTCAAGTTATTATGGAGAGTAAAACTCGCTCTCTAAAAGCGAAAACTGGCTTCCGAGGTGATTCAAGCTTGAAAGCTGCTCTAGAACTTGAAATGGAGCTTCTGAATTGGTCCACCCGGTTTAACAATTGGATTAGCACCCAAAAATCTTATGTTGAGTCCTTGAATGAGTGGCTCTTAAGATTCCTTGACCGTAAGCCTGAAGAAACCCCAGATGGACTTGCTCCTTTCTCACCAGGCCGCATTGGAGCTCCACCCATTTTCATAATCTGCAATGACTGGCACCAAGCTATGGAAAACATTTCGGAAAAGAAGGTATCCAATGCCATTCAAGATTTTGCATCAAACTTGCACGAATTATGGGAAAGACAAGATGAGGAGCAACGTCAAAGAATCAGAGCGGAGTTTGTTTCTAAGGATTTTGAAAAACGTCTTAAAACTCTACATATGGAGAGAGGAAGGTTGGAACATGCACATGAAGGGAATACTTCGGACAGAATTGCCGCGACAAAAAATCCTTCTGAGAGTGGGATTTCACCACTTGATGATCTAACGGTTGATTTGGATTCCATGAGGAAGAGGTTGGACGAAGAGAGAGGTAGACATAAGGATGCTATTAAACTTGTTCACAATGCAGCTTCTAATAGTATACAGACTGGATTGGTTCCCATTTTCGCAGCTTTAGAGAAGTTTAGCTCGGAAGTTCTGAGGGCTCATGAGCAAGTTAGAGTTCAAGGAGCTGGGATTTCTTAG 2715 45.6 MGCGGSKVDELQLVTLCRERKEFLKAASQQRYAFAASHVSYFRSLEHIGDALRKFVDEEIVIAGLGSSSAPGSPVLTLPSEEGKRKKPKTAGGKNKNHNSSTSSTSISHSVSISEEHFRDQGTAKDIEESHLHLSSGSEFDFEAGSPSEHIHAVDSPEEQDYPAPYAYPPGEYWGPPPGANNTYAYYMKKSATPAKRMVYEEPERYSASYGQWPDSSNNYPAYSGYPQYGNGGSYGFGMGSPSQNYQYNQHQPSPPAPPPAPPSPPRVSPWDYINVFENYNYDNPGFYARSGQGYGSDASSPDSNEVRMREGIPDLEDETEHEELKEAHRERKKLNGDHLTDKYGNLGEGTSKDVPSQSREESSKAVPPMQNSDSSMSGEGKGVTSSPETIVLETFEEGSVWKKGVSFEVEESSILDVESSKPSSFSASGPGTRDSTMPSSLTTLSAHGIRDLPEVVKEIRDEFDAASSYGKEVAMLLEVGKLPYQSKTTALKVIFARILYLVAPSMLSSPPSRSTVRLDVRTMKMGKEYSEFGDSRSEFSAGNLSSTLEKLYAWEKKLYKEVKDEERLRLIYEKECKRLKTLDDRGADSSKIDASQASVRNLLTKIDVCIRAVDAISSKIHKLRDEELEPQLTKLIHGLIRMWKSMLKCHQKQFQVIMESKTRSLKAKTGFRGDSSLKAALELEMELLNWSTRFNNWISTQKSYVESLNEWLLRFLDRKPEETPDGLAPFSPGRIGAPPIFIICNDWHQAMENISEKKVSNAIQDFASNLHELWERQDEEQRQRIRAEFVSKDFEKRLKTLHMERGRLEHAHEGNTSDRIAATKNPSESGISPLDDLTVDLDSMRKRLDEERGRHKDAIKLVHNAASNSIQTGLVPIFAALEKFSSEVLRAHEQVRVQGAGIS 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11315265 11319856 - Conep04aG0146600.1 Cone4ag1415 436393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1415 904 MobiDBLite consensus disorder prediction 94 112 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 819 833 - -
Cone4ag1415 904 Coils Coil 835 855 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 291 388 - -
Cone4ag1415 904 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Cone4ag1415 904 PANTHER UNCHARACTERIZED 1 899 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 361 388 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 237 251 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 236 269 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 69 122 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 322 340 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 813 837 - -
Cone4ag1415 904 Pfam Protein of unknown function (DUF632) 453 772 IPR006867 -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 252 269 - -
Cone4ag1415 904 MobiDBLite consensus disorder prediction 419 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1415 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0035 Cone-Chr20:185490 Cone4ag1415 Cone-Chr4:11315265 1.48E-66 dispersed
Cone3ag1238 Cone-Chr3:31137885 Cone4ag1415 Cone-Chr4:11315265 1.37E-112 dispersed
Cone4ag1415 Cone-Chr4:11315265 Cone8ag1318 Cone-Chr8:10697277 1.79E-92 dispersed
Cone3ag0972 Cone-Chr3:28257588 Cone4ag1415 Cone-Chr4:11315265 1.55E-62 transposed
Cone15ag0520 Cone-Chr15:2538802 Cone4ag1415 Cone-Chr4:11315265 6.96E-40 wgd
Cone17ag1288 Cone-Chr17:9229415 Cone4ag1415 Cone-Chr4:11315265 1.89E-284 wgd
Cone4ag1415 Cone-Chr4:11315265 Cone7ag1523 Cone-Chr7:10572890 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35