Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1422 | ATGGCGCCATTGTTACAGAGCTCCCAGCCATGGGTGGAGAAATATAGACCAAAGCAAGTGAAAGATGTAGCGCATCAGGACGAGGTGGTGAAGGTCCTCACCAACACGCTCGAGACTAGTAATTGCCCTCATATGCTTTTCTATGGTCCGCCCGGTACTGGAAAAACAACCACCGCTCTTGCGATTGCTCACCAGCTTTACGGACCTGAGCTTTACAAGTCTAGGGTATTAGAGCTCAATGCAAGTGATGACCGTGGGATCAATGTTGTCCGGACTAAGATTAAAGATTTTGCTGCTATTGCTGTTGGTTCTGGTCAGCGTCAAGGGGGTTACCCTTGTCCACCATACAAGATTATTATCCTTGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGACGTACAATGGAAACTTACTCCAAAGTCACAAGATTCTTTTTTATATGTAATTACATCAGCAGGATCATAGAGCCACTTGCTTCCAGATGTGCAAAGTTCAGGTTTAAGCCACTTTCAGAAGAAATTATGACCAATCGTATATTGCATATTTGCAATGAGGAAGGTCTAACTCTGGATGGAGAGGCTCTTTCAACATTAAGCTCTATCTCACAAGGTGATCTGCGTCGTGCAATTACATACTTGCAGTCTGCAGCACGCTTGTTCGGATCATCAATTTCTTCTAAAGACCTGATAAGTGTATCTGGGGTTGTCCCACAAGAAGTTGTTCAGGCTATCTTTGCAGCATGTCAGAGTGGTAACTTTGATTCAGCTAACAAGGAAGTCAATGCTGTGATTGCAGAGGGATATCCAGTATCTCAGATGCTTTCGCAGTTGTTTGAGGTGGTGGTTGGAGCAGAGGATATAGGGGATGAACAGAAAGCTAGGATATGCAAGAAGTTGGCTGAAGCTGACAAGTCGCTTGTTGATGGCGCCGATGAATACTTGCAATTACTTGATGTAGCTAGTAATACTATGCAAGCTCTCTCTGAGATGCAACACTAG | 1011 | 44.41 | MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVKVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAIAVGSGQRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTNRILHICNEEGLTLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPQEVVQAIFAACQSGNFDSANKEVNAVIAEGYPVSQMLSQLFEVVVGAEDIGDEQKARICKKLAEADKSLVDGADEYLQLLDVASNTMQALSEMQH | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11344487 | 11346796 | - | Conep04aG0147400.1 | Cone4ag1422 | 436400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1422 | 336 | FunFam | Replication factor C subunit 4 | 176 | 239 | - | - | |
Cone4ag1422 | 336 | CDD | AAA | 26 | 166 | - | - | |
Cone4ag1422 | 336 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 233 | IPR027417 | - | |
Cone4ag1422 | 336 | FunFam | Replication factor C subunit 4 | 240 | 329 | - | - | |
Cone4ag1422 | 336 | Gene3D | - | 3 | 173 | IPR027417 | - | |
Cone4ag1422 | 336 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 240 | 325 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Cone4ag1422 | 336 | Pfam | Replication factor C C-terminal domain | 241 | 324 | IPR013748 | - | |
Cone4ag1422 | 336 | Pfam | RCF1/5-like, AAA+ ATPase lid domain | 185 | 222 | - | - | |
Cone4ag1422 | 336 | Gene3D | - | 240 | 329 | - | - | |
Cone4ag1422 | 336 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 9 | 330 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Cone4ag1422 | 336 | Pfam | ATPase family associated with various cellular activities (AAA) | 45 | 173 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cone4ag1422 | 336 | Gene3D | - | 176 | 239 | - | - | |
Cone4ag1422 | 336 | SMART | AAA_5 | 41 | 174 | IPR003593 | GO:0016887(InterPro) | |
Cone4ag1422 | 336 | FunFam | Replication factor C subunit 5 | 3 | 174 | - | - | |
Cone4ag1422 | 336 | CDD | HLD_clamp_RFC | 174 | 233 | IPR047854 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1292 | Cone-Chr17:9251825 | Cone4ag1422 | Cone-Chr4:11344487 | 1.71E-63 | dispersed | |
Cone20ag0436 | Cone-Chr20:2179466 | Cone4ag1422 | Cone-Chr4:11344487 | 8.45E-41 | dispersed | |
Cone3ag0535 | Cone-Chr3:2644625 | Cone4ag1422 | Cone-Chr4:11344487 | 3.30E-30 | dispersed | |
Cone4ag1422 | Cone-Chr4:11344487 | Cone7ag1515 | Cone-Chr7:10545761 | 6.26E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1422 | K10755 | - | vvi:100245502 | 595.504 |