Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1422 ATGGCGCCATTGTTACAGAGCTCCCAGCCATGGGTGGAGAAATATAGACCAAAGCAAGTGAAAGATGTAGCGCATCAGGACGAGGTGGTGAAGGTCCTCACCAACACGCTCGAGACTAGTAATTGCCCTCATATGCTTTTCTATGGTCCGCCCGGTACTGGAAAAACAACCACCGCTCTTGCGATTGCTCACCAGCTTTACGGACCTGAGCTTTACAAGTCTAGGGTATTAGAGCTCAATGCAAGTGATGACCGTGGGATCAATGTTGTCCGGACTAAGATTAAAGATTTTGCTGCTATTGCTGTTGGTTCTGGTCAGCGTCAAGGGGGTTACCCTTGTCCACCATACAAGATTATTATCCTTGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGACGTACAATGGAAACTTACTCCAAAGTCACAAGATTCTTTTTTATATGTAATTACATCAGCAGGATCATAGAGCCACTTGCTTCCAGATGTGCAAAGTTCAGGTTTAAGCCACTTTCAGAAGAAATTATGACCAATCGTATATTGCATATTTGCAATGAGGAAGGTCTAACTCTGGATGGAGAGGCTCTTTCAACATTAAGCTCTATCTCACAAGGTGATCTGCGTCGTGCAATTACATACTTGCAGTCTGCAGCACGCTTGTTCGGATCATCAATTTCTTCTAAAGACCTGATAAGTGTATCTGGGGTTGTCCCACAAGAAGTTGTTCAGGCTATCTTTGCAGCATGTCAGAGTGGTAACTTTGATTCAGCTAACAAGGAAGTCAATGCTGTGATTGCAGAGGGATATCCAGTATCTCAGATGCTTTCGCAGTTGTTTGAGGTGGTGGTTGGAGCAGAGGATATAGGGGATGAACAGAAAGCTAGGATATGCAAGAAGTTGGCTGAAGCTGACAAGTCGCTTGTTGATGGCGCCGATGAATACTTGCAATTACTTGATGTAGCTAGTAATACTATGCAAGCTCTCTCTGAGATGCAACACTAG 1011 44.41 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVKVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAIAVGSGQRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTNRILHICNEEGLTLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPQEVVQAIFAACQSGNFDSANKEVNAVIAEGYPVSQMLSQLFEVVVGAEDIGDEQKARICKKLAEADKSLVDGADEYLQLLDVASNTMQALSEMQH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11344487 11346796 - Conep04aG0147400.1 Cone4ag1422 436400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1422 336 FunFam Replication factor C subunit 4 176 239 - -
Cone4ag1422 336 CDD AAA 26 166 - -
Cone4ag1422 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cone4ag1422 336 FunFam Replication factor C subunit 4 240 329 - -
Cone4ag1422 336 Gene3D - 3 173 IPR027417 -
Cone4ag1422 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone4ag1422 336 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Cone4ag1422 336 Pfam RCF1/5-like, AAA+ ATPase lid domain 185 222 - -
Cone4ag1422 336 Gene3D - 240 329 - -
Cone4ag1422 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 330 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone4ag1422 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone4ag1422 336 Gene3D - 176 239 - -
Cone4ag1422 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
Cone4ag1422 336 FunFam Replication factor C subunit 5 3 174 - -
Cone4ag1422 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1292 Cone-Chr17:9251825 Cone4ag1422 Cone-Chr4:11344487 1.71E-63 dispersed
Cone20ag0436 Cone-Chr20:2179466 Cone4ag1422 Cone-Chr4:11344487 8.45E-41 dispersed
Cone3ag0535 Cone-Chr3:2644625 Cone4ag1422 Cone-Chr4:11344487 3.30E-30 dispersed
Cone4ag1422 Cone-Chr4:11344487 Cone7ag1515 Cone-Chr7:10545761 6.26E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1422 K10755 - vvi:100245502 595.504