Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1422 ATGGCGCCATTGTTACAGAGCTCCCAGCCATGGGTGGAGAAATATAGACCAAAGCAAGTGAAAGATGTAGCGCATCAGGACGAGGTGGTGAAGGTCCTCACCAACACGCTCGAGACTAGTAATTGCCCTCATATGCTTTTCTATGGTCCGCCCGGTACTGGAAAAACAACCACCGCTCTTGCGATTGCTCACCAGCTTTACGGACCTGAGCTTTACAAGTCTAGGGTATTAGAGCTCAATGCAAGTGATGACCGTGGGATCAATGTTGTCCGGACTAAGATTAAAGATTTTGCTGCTATTGCTGTTGGTTCTGGTCAGCGTCAAGGGGGTTACCCTTGTCCACCATACAAGATTATTATCCTTGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGACGTACAATGGAAACTTACTCCAAAGTCACAAGATTCTTTTTTATATGTAATTACATCAGCAGGATCATAGAGCCACTTGCTTCCAGATGTGCAAAGTTCAGGTTTAAGCCACTTTCAGAAGAAATTATGACCAATCGTATATTGCATATTTGCAATGAGGAAGGTCTAACTCTGGATGGAGAGGCTCTTTCAACATTAAGCTCTATCTCACAAGGTGATCTGCGTCGTGCAATTACATACTTGCAGTCTGCAGCACGCTTGTTCGGATCATCAATTTCTTCTAAAGACCTGATAAGTGTATCTGGGGTTGTCCCACAAGAAGTTGTTCAGGCTATCTTTGCAGCATGTCAGAGTGGTAACTTTGATTCAGCTAACAAGGAAGTCAATGCTGTGATTGCAGAGGGATATCCAGTATCTCAGATGCTTTCGCAGTTGTTTGAGGTGGTGGTTGGAGCAGAGGATATAGGGGATGAACAGAAAGCTAGGATATGCAAGAAGTTGGCTGAAGCTGACAAGTCGCTTGTTGATGGCGCCGATGAATACTTGCAATTACTTGATGTAGCTAGTAATACTATGCAAGCTCTCTCTGAGATGCAACACTAG 1011 44.41 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVKVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAIAVGSGQRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTNRILHICNEEGLTLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPQEVVQAIFAACQSGNFDSANKEVNAVIAEGYPVSQMLSQLFEVVVGAEDIGDEQKARICKKLAEADKSLVDGADEYLQLLDVASNTMQALSEMQH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11344487 11346796 - Conep04aG0147400.1 Cone4ag1422 436400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1422 336 FunFam Replication factor C subunit 4 176 239 - -
Cone4ag1422 336 CDD AAA 26 166 - -
Cone4ag1422 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cone4ag1422 336 FunFam Replication factor C subunit 4 240 329 - -
Cone4ag1422 336 Gene3D - 3 173 IPR027417 -
Cone4ag1422 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone4ag1422 336 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Cone4ag1422 336 Pfam RCF1/5-like, AAA+ ATPase lid domain 185 222 - -
Cone4ag1422 336 Gene3D - 240 329 - -
Cone4ag1422 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 330 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone4ag1422 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone4ag1422 336 Gene3D - 176 239 - -
Cone4ag1422 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
Cone4ag1422 336 FunFam Replication factor C subunit 5 3 174 - -
Cone4ag1422 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1422 K10755 - - vvi:100245502 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1292 Cone-Chr17:9251825 Cone4ag1422 Cone-Chr4:11344487 1.71E-63 dispersed
Cone20ag0436 Cone-Chr20:2179466 Cone4ag1422 Cone-Chr4:11344487 8.45E-41 dispersed
Cone3ag0535 Cone-Chr3:2644625 Cone4ag1422 Cone-Chr4:11344487 3.30E-30 dispersed
Cone4ag1422 Cone-Chr4:11344487 Cone7ag1515 Cone-Chr7:10545761 6.26E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g231 . Blo12g01123 . Bda03g00016 . Bpe04g00011 Bma04g00016 Bma01g02668 . . Cma01g01369 . . . . . . . . . . . . . . . . . . . . Cone4ag1422 Cone7ag1515 . . . Csa04g01779 . . . . . . . . . . . Cmo01g01421 . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00817
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1488 . 2 874 Core DNA Replication Machinery Family AT4G14700 59.5 3.9e-283 971.5
Cone11ag1488 . 1 874 Core DNA Replication Machinery Family AT4G12620 60.9 1.2e-292 1003.0
Cone19ag0109 . 2 357 Core DNA Replication Machinery Family AT2G37560 66.3 3.0e-136 482.3
Cone13ag0792 . 5 417 Core DNA Replication Machinery Family AT2G01120 63.3 9.1e-151 530.8
Cone14ag0366 . 1 535 Core DNA Replication Machinery Family AT4G29910 56.1 8.7e-165 577.8
Cone19ag0949 . 1 275 Core DNA Replication Machinery Family AT1G26840 64.7 6.9e-94 341.3
Cone14ag0637 . 1 946 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1381.3
Cone9ag0904 . 1 578 Core DNA Replication Machinery Family AT5G46280 79.8 6.1e-267 917.1
Cone3ag1220 . 1 839 Core DNA Replication Machinery Family AT2G16440 70.4 0.0e+00 1122.8
Cone16ag0446 . 1 728 Core DNA Replication Machinery Family AT2G07690 75.5 1.4e-313 1072.4
Cone2ag0557 . 44 541 Core DNA Replication Machinery Family AT2G07690 63.4 4.1e-191 665.6
Cone5ag1384 . 7 783 Core DNA Replication Machinery Family AT5G44635 69.2 0.0e+00 1119.4
Cone20ag0983 . 5 719 Core DNA Replication Machinery Family AT4G02060 83.2 0.0e+00 1200.7
Cone5ag1091 . 31 492 Core DNA Replication Machinery Family AT2G29680 56.3 1.7e-143 506.9
Cone1ag0580 . 96 449 Core DNA Replication Machinery Family AT2G29680 59.6 1.1e-107 387.9
Cone5ag1091 . 32 453 Core DNA Replication Machinery Family AT1G07270 56.0 2.7e-127 453.0
Cone1ag0580 . 96 427 Core DNA Replication Machinery Family AT1G07270 61.4 3.5e-103 372.9
Cone7ag0082 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.8 3.6e-254 874.8
Cone4ag0091 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.5 1.5e-252 869.4
Cone19ag1277 . 20 800 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1097.4
Cone8ag1012 . 1276 1913 Core DNA Replication Machinery Family AT2G14050 76.8 3.9e-286 981.1
Cone12ag0982 . 6 505 Core DNA Replication Machinery Family AT2G14050 59.2 1.7e-185 646.7
Cone16ag0785 . 5 334 Core DNA Replication Machinery Family AT2G20980 59.8 4.9e-106 382.1
Cone2ag0356 . 1 199 Core DNA Replication Machinery Family AT1G80190 70.8 3.8e-78 288.5
Cone10ag0951 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.9e-59 224.6
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT1G19080 69.8 1.8e-71 266.2
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT3G55490 69.8 1.8e-71 266.2
Cone14ag0711 . 15 164 Core DNA Replication Machinery Family AT5G49010 64.7 4.5e-49 191.8
Cone11ag1102 . 1 1553 Core DNA Replication Machinery Family AT5G67100 60.8 0.0e+00 1779.6
Cone19ag1109 . 140 760 Core DNA Replication Machinery Family AT1G67630 61.1 1.4e-221 766.5
Cone13ag1130 . 4 313 Core DNA Replication Machinery Family AT1G67630 50.2 2.7e-79 293.9
Cone6ag0848 . 1 320 Core DNA Replication Machinery Family AT5G41880 65.0 4.2e-130 462.2
Cone9ag0846 . 1 231 Core DNA Replication Machinery Family AT5G41880 64.9 1.9e-90 330.5
Cone9ag1229 . 3 1010 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1621.7
Cone13ag0534 . 4 439 Core DNA Replication Machinery Family AT2G42120 78.3 1.1e-207 719.9
Cone19ag0482 . 4 439 Core DNA Replication Machinery Family AT2G42120 76.7 2.1e-203 705.7
Cone1ag0529 . 1 2094 Core DNA Replication Machinery Family AT1G08260 69.8 0.0e+00 2929.0
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT1G08260 57.5 4.5e-57 221.9
Cone5ag1350 . 1 151 Core DNA Replication Machinery Family AT1G08260 64.2 1.7e-48 193.4
Cone1ag0529 . 10 2211 Core DNA Replication Machinery Family AT2G27120 66.6 0.0e+00 2889.4
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT2G27120 53.2 1.3e-48 193.7
Cone5ag1350 . 9 151 Core DNA Replication Machinery Family AT2G27120 66.4 7.3e-47 188.0
Cone19ag0415 . 7 459 Core DNA Replication Machinery Family AT5G22110 64.9 3.6e-175 612.1
Cone5ag1309 . 1 956 Core DNA Replication Machinery Family AT5G22010 63.0 1.9e-310 1062.4
Cone12ag0326 . 23 342 Core DNA Replication Machinery Family AT1G63160 92.8 6.2e-171 597.4
Cone8ag0325 . 20 205 Core DNA Replication Machinery Family AT1G63160 53.0 5.1e-80 295.4
Cone3ag0535 . 41 394 Core DNA Replication Machinery Family AT5G27740 85.9 5.1e-179 624.4
Cone4ag1422 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.8e-154 542.7
Cone7ag1515 . 2 137 Core DNA Replication Machinery Family AT1G21690 70.1 2.4e-45 180.3
Cone17ag1292 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.9 4.2e-152 535.0
Cone20ag0436 . 1 297 Core DNA Replication Machinery Family AT1G77470 61.2 6.6e-89 325.1
Cone7ag0036 . 24 617 Core DNA Replication Machinery Family AT2G06510 69.5 5.4e-253 870.9
Cone12ag0531 . 32 688 Core DNA Replication Machinery Family AT2G06510 53.7 3.6e-204 708.8
Cone8ag0528 . 32 695 Core DNA Replication Machinery Family AT2G06510 53.1 9.7e-202 700.7
Cone2ag0799 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.7 9.4e-250 860.1
Cone16ag0210 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.2 5.1e-248 854.4
Cone12ag0531 . 6 811 Core DNA Replication Machinery Family AT5G45400 50.2 1.3e-233 807.0
Cone2ag0799 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.3 2.9e-254 875.2
Cone16ag0210 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.6 3.2e-253 871.7
Cone12ag0531 . 6 798 Core DNA Replication Machinery Family AT4G19130 55.3 3.2e-234 808.9
Cone8ag0528 . 6 820 Core DNA Replication Machinery Family AT4G19130 54.2 6.1e-233 804.7
Cone5ag0109 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 1.5e-182 636.3
Cone1ag1587 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 3.7e-181 631.7
Cone7ag0441 . 2 1118 Core DNA Replication Machinery Family AT1G08840 52.8 1.4e-306 1049.7
Cone1ag1430 . 1 296 Core DNA Replication Machinery Family AT2G25100 67.8 7.6e-114 407.5
Cone1ag0493 . 170 805 Core DNA Replication Machinery Family AT1G08130 76.3 3.5e-289 991.5
Cone19ag1014 . 25 624 Core DNA Replication Machinery Family AT1G08130 63.9 3.2e-226 782.3
Cone6ag0127 . 127 494 Core DNA Replication Machinery Family AT1G08130 66.8 2.9e-134 476.9
Cone1ag0493 . 206 805 Core DNA Replication Machinery Family AT1G49250 67.8 2.9e-236 815.5
Cone19ag1014 . 65 624 Core DNA Replication Machinery Family AT1G49250 57.8 4.2e-187 652.1
Cone6ag0127 . 165 495 Core DNA Replication Machinery Family AT1G49250 61.1 4.0e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010443 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 29