Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1423 ATGTCGACCCAGAATCGCCGCTCTTCATACTCATCTTCGACTTCAACGACGTCGTCGTCCTTGCCAAAGCGTAACTCCCCATCATCGTCGTCGGAAAATGCTGGAAAAGTTATGGCGAAGAAGCGAGTACCTCTCGGTAATATCAGCAATCTTAAGAATGCGGCAGCACGGAGCTCCGTGCCATCATCTACTATGATTCCGTGTACATCTAAATTTGCTAAGGCCAAGACAGTAGTTCTGCCTCCTACCACCACAACACTACTCAATGCCAAGTCAAATTCAATTGCTCTAAGCAAGGTCAAAGCATTTCCAAGAAGCGATGCTGCTTTTCCCAATCTGCTTGCTCCGCCTTCCCTGTGCAAAATGGACGTTTCTCCAAGCAAATCAGATACAGTTTCAGTTTCTATGGACGAAACAATGTCTACTTGTGAATCTTTCAACAGCCCTGAAGTTGAATACTTAGACAACAGTGATGTTCTGCCAATGGATTCCATTGATCGGAAGACTTTTAGCACTCTAAACATTTCTGACAATTCGAAAACAACAGGGAACGTTTTTAATAGAGATGTTTCTGTGAAAATGGAAACAGATGACACAGTTGTGAATGTTGATAACAATTTGACAGATCCTCAGCTTTGTGCCACTATTGCTTGTGATATATACAAGCATCTACGTGCCTCTGAGTTAAAGAAGAGGCCTTCAACAGACTTCATGGAAAGAACTCAGAAGGACATAAATCCCAGCATGCGTGCAATACTGATTGATTGGCTTGTCGAGGTAGCAGAAGAGTATAGGCTTGTTCCTGATACGTTATACTTGACAATAAACTACATTGACCGTTACCTTTCTGGGAATGTGATGAATCGACAACAGTTGCAGCTGCTTGGAGTCGCTTGCATGATGATTGCCTCCAAGTACGAGGAAATTTGTGCACCTCAAGTGGAGGAATTTTGTTACATTACGGACAACACTTATTTCAAGGAAGAAGTCTTGCAAATGGAATCTGCCATTTTGAATTACTTGAAGTTTGAAATGACAGCCCCTACAGCTAAATGTTTCTTAAGGCGATTCATTAGAGCAGCACAAATGATTGACGAATCACCAGGAGCATCAATGCATATAGAGTGCCTCGCAAACTACCTCGCCGAGCTATCGCTTTTAGAGTACAGCATGCTCTCTTACGCTCCTTCCCTCATAGCCGCATCAGCTATTTTCCTGGCCATCTTCATACTTTCACCTGTGAAGAAACCATGGAACACCACCATGCATCACTATACACTATATCAACCATCCGACCTGCATGATTGCGTCAAGGATCTACATCGCCTATGCTGTAACACAGAGAATTCTAGCCTACCTGCTATCAGAGAGAAGTACAGTCAGCATAAGTACAAGCATGTGGCTAAGAAGTACTACCCCCCGGCTTCAATACCGGCTGAGTTTTTCCAGAACTAA 1455 43.44 MSTQNRRSSYSSSTSTTSSSLPKRNSPSSSSENAGKVMAKKRVPLGNISNLKNAAARSSVPSSTMIPCTSKFAKAKTVVLPPTTTTLLNAKSNSIALSKVKAFPRSDAAFPNLLAPPSLCKMDVSPSKSDTVSVSMDETMSTCESFNSPEVEYLDNSDVLPMDSIDRKTFSTLNISDNSKTTGNVFNRDVSVKMETDDTVVNVDNNLTDPQLCATIACDIYKHLRASELKKRPSTDFMERTQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTINYIDRYLSGNVMNRQQLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAILNYLKFEMTAPTAKCFLRRFIRAAQMIDESPGASMHIECLANYLAELSLLEYSMLSYAPSLIAASAIFLAIFILSPVKKPWNTTMHHYTLYQPSDLHDCVKDLHRLCCNTENSSLPAIREKYSQHKYKHVAKKYYPPASIPAEFFQN 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11351242 11354702 + Conep04aG0147500.1 Cone4ag1423 436401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1423 484 CDD CYCLIN_AtCycA_like_rpt1 209 344 - -
Cone4ag1423 484 Gene3D - 219 469 - -
Cone4ag1423 484 FunFam Cyclin A1 335 469 - -
Cone4ag1423 484 SUPERFAMILY Cyclin-like 348 473 IPR036915 -
Cone4ag1423 484 PANTHER CYCLINS 199 461 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone4ag1423 484 Gene3D - 233 346 - -
Cone4ag1423 484 FunFam Mitotic cyclin 6 233 333 - -
Cone4ag1423 484 Pfam Cyclin, N-terminal domain 219 346 IPR006671 -
Cone4ag1423 484 CDD CYCLIN_AtCycA-like_rpt2 348 464 - -
Cone4ag1423 484 Pfam Cyclin, C-terminal domain 348 469 IPR004367 -
Cone4ag1423 484 PIRSF Cyclin_A_B_D_E 1 481 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone4ag1423 484 MobiDBLite consensus disorder prediction 1 45 - -
Cone4ag1423 484 SMART Cyclin_C_2 348 473 IPR004367 -
Cone4ag1423 484 ProSitePatterns Cyclins signature. 250 281 IPR048258 -
Cone4ag1423 484 SUPERFAMILY Cyclin-like 208 345 IPR036915 -
Cone4ag1423 484 MobiDBLite consensus disorder prediction 1 35 - -
Cone4ag1423 484 SMART cyclin_7 352 442 IPR013763 -
Cone4ag1423 484 SMART cyclin_7 255 339 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0200 Cone-Chr17:961179 Cone4ag1423 Cone-Chr4:11351242 5.04E-96 dispersed
Cone20ag0217 Cone-Chr20:931327 Cone4ag1423 Cone-Chr4:11351242 5.33E-92 dispersed
Cone20ag1212 Cone-Chr20:8063401 Cone4ag1423 Cone-Chr4:11351242 1.64E-92 dispersed
Cone4ag1423 Cone-Chr4:11351242 Cone7ag1730 Cone-Chr7:11463130 1.03E-95 dispersed
Cone4ag1423 Cone-Chr4:11351242 Cone7ag1514 Cone-Chr7:10540540 2.36E-306 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1423 K06627 - rcu:8270999 642.499