Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1426 ATGACTAAACTTCTCCTTTTCTGTTCCACATTCTTTCTCCTCTTCCTCACCACCGTCTTCTCCTCCACTGAGTCACCGTGTCCAATTGATCTAAGCTATGTCGAAACCTTCCCATGGGACACATCCTTATGCACAAGTCAAAACAGAACCCAATGCTGCCAGACCCTGCTCAGCCTTTTCGGCATGGGTCTGGCCCAACACCTCAAACAAACCCAACTCTTCCAACTTCCCAATGTCTCCTCTTCATCTTCCTGCCTCTCCAGTTTTCAATCCCACCTCTCTTCCATGTCAATCCCATCTTCCATTGTCCCTTCCTGCTTCCAAAACTCAACTCAGTTTGTAGTCAACGCTTCAGGTTGTGCTGGAATCATCTCCACAGAAGACTGGGTTTCCAAAATTGGCCCAACTAGTGATATAGACACTTCATGTCAAGGTGATTTGACCGGGCTGACTCGATGTGGATCCTGTGTCGAAGCCGGTATGAAAGTCAATTCTCAACTCATTGCAATAGACCCAAATGGGACTGAATGCTTTTATTTCACTGTTCTATATGCTGCTGGAATTGTTAATGACTTAGGCCCAATGGATACTAGAACTGTCTCTTGCATATTAGGCCTACCTTTATCCAGCTCTGCCACCATTAAAGGGGATAAGAAAATAAGTATAAAAGCTTTGTATAGGTTGGTATTTGGATTATTGGGTGCTTTTGTTGTTGTTCTGTTTGCTTTTATTGCAATCATGTTGTATAGGTATAGAAGAAGAAGCAATAAAACGAAACAGAATAATGCTTATGATCACGAGGAGTTTGAGACTAGTTTTCGGGTTAATGTGCTGGCAAAATCTGGTGCGCAATGGTTTGATTTATGGGAACTAGAACAAGCTACAAGCGGGTTTTCTCAGAGAAATTTAATAGGCCAAGGCGGATACGGAATTGTCTATAAGGGCGAGCTTTTAGACGGGACATTAGTTGCAGTAAAACAGGTAGTTGATCTAGACTCGAAAGGAGACGAAGAGTTCTCTAATGAGGTTGAGATCATAAGCAAAGTACGACACAGAAATCTTCTCGCTCTACGTGGTTGTTGTGTTGCAAGTGACAGTTTTAAAGGGAAGAGACGGTTTTTAGTTTATGATTTCATGTCAAATGGTAACCTAAGTGATCATCTGTACAGCTCAAGTTTAGTAGCAAGAAAGGAACTAACTTGGCCTCAGAGAAAGAGTATAATTCTAGATGTGGCTAAAGGGCTTGCGTACTTGCACAATGGCGTAAAACCATCAATTTACCATCGCGACATAAAGGCAACTAATATACTTCTAGATTCGGAAATGAAAGCCAGAGTAGCAGATTTCGGATTGGCTAAACAGATTAGCAGAGAAGGGCAATCTCATTTGACCACAAGGGTTGCTGGGACACGTGGATACTTAGCGCCCGAGTATGCTCTGTACGGGCAATTGACCGATAAGAGCGATGTTTACAGTTTTGGGGTTGTGATTCTCGAGATTATAAGCGGGAGGAAAGTGCTTGATACATCAAATTTGTCTGTCGTTTTGATAACCGATTGGGTTTGGACACTTACGAAATCGGGAAATGTGGATGAGGTTTTCCATGAATCAATAAGGGAAGAGGGACCAAAAGGTGTGATGGAGAGATTTGTTCATATTGGGATACTTTGTGCTCATGTAATGGTGGCTTTTAGGCCCACCGTTTCCGAGGCCTTGAAGATGTTGGAGGGTGATATTGATATTCCGAGTTTACCTGATAGGCCATTGCCGCTTAGTCATGAATCTTTTAGGGCGTCTTCGCAGAATGAGAGTTCAATGTTTAGCTCGGGTTTGAGCAAAATATAG 1845 42.71 MTKLLLFCSTFFLLFLTTVFSSTESPCPIDLSYVETFPWDTSLCTSQNRTQCCQTLLSLFGMGLAQHLKQTQLFQLPNVSSSSSCLSSFQSHLSSMSIPSSIVPSCFQNSTQFVVNASGCAGIISTEDWVSKIGPTSDIDTSCQGDLTGLTRCGSCVEAGMKVNSQLIAIDPNGTECFYFTVLYAAGIVNDLGPMDTRTVSCILGLPLSSSATIKGDKKISIKALYRLVFGLLGAFVVVLFAFIAIMLYRYRRRSNKTKQNNAYDHEEFETSFRVNVLAKSGAQWFDLWELEQATSGFSQRNLIGQGGYGIVYKGELLDGTLVAVKQVVDLDSKGDEEFSNEVEIISKVRHRNLLALRGCCVASDSFKGKRRFLVYDFMSNGNLSDHLYSSSLVARKELTWPQRKSIILDVAKGLAYLHNGVKPSIYHRDIKATNILLDSEMKARVADFGLAKQISREGQSHLTTRVAGTRGYLAPEYALYGQLTDKSDVYSFGVVILEIISGRKVLDTSNLSVVLITDWVWTLTKSGNVDEVFHESIREEGPKGVMERFVHIGILCAHVMVAFRPTVSEALKMLEGDIDIPSLPDRPLPLSHESFRASSQNESSMFSSGLSKI 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11369690 11371534 + Conep04aG0147800.1 Cone4ag1426 436404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1426 614 CDD STKc_IRAK 304 577 - -
Cone4ag1426 614 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 379 583 - -
Cone4ag1426 614 Pfam Protein tyrosine and serine/threonine kinase 301 573 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1426 614 FunFam Receptor-like serine/threonine-protein kinase At4g25390 263 378 - -
Cone4ag1426 614 Pfam SPARK 22 178 IPR043891 -
Cone4ag1426 614 Gene3D Phosphorylase Kinase; domain 1 256 378 - -
Cone4ag1426 614 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Cone4ag1426 614 Gene3D Transferase(Phosphotransferase) domain 1 379 581 - -
Cone4ag1426 614 ProSiteProfiles Protein kinase domain profile. 298 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1426 614 SMART serkin_6 298 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1426 614 SUPERFAMILY Protein kinase-like (PK-like) 284 604 IPR011009 -
Cone4ag1426 614 PANTHER OS01G0750732 PROTEIN 46 605 IPR050885 -
Cone4ag1426 614 MobiDBLite consensus disorder prediction 595 614 - -
Cone4ag1426 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0905 Cone-Chr10:4701371 Cone4ag1426 Cone-Chr4:11369690 2.28E-80 dispersed
Cone11ag0886 Cone-Chr11:7301570 Cone4ag1426 Cone-Chr4:11369690 3.79E-115 dispersed
Cone17ag0465 Cone-Chr17:2222402 Cone4ag1426 Cone-Chr4:11369690 2.93E-118 dispersed
Cone3ag0933 Cone-Chr3:4830994 Cone4ag1426 Cone-Chr4:11369690 4.33E-213 dispersed
Cone4ag1426 Cone-Chr4:11369690 Cone6ag0207 Cone-Chr6:977819 6.14E-74 dispersed
Cone7ag1511 Cone-Chr7:10526707 Cone4ag1426 Cone-Chr4:11369690 7.69E-37 transposed
Cone4ag1426 Cone-Chr4:11369690 Cone6ag1352 Cone-Chr6:10877275 8.60E-45 wgd
Cone4ag1426 Cone-Chr4:11369690 Cone7ag1510 Cone-Chr7:10525823 4.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82790 PF02466 Tim17 9.30E-12 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1426 - - - 0.0