Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1429 ATGGCCACTCAGCCTGCTCTAATAAACTCCACTTCCTTCTTCACTTCAAACCCGCCTACTCGTCACCTCACCTTCTCCGTTTCCTTTTCTATCCCGCCGTCGATATTCCGCTTCTCCCGCCCTGAACGTCGTAGAGTTTTTCTCACTTCCTCGGCTACAGCCACCGCTGTTGCTGCGTCTCTCATCAAGGATAATTTGGGTCGTTTTGGGAAGAACTGGACTGATTTAACGAGCTTGAATTCCTGGGTTGTGCGTGATTACTACCGTCTTGTGCATTCTGTCAATGACTTTGAGCAGCTGATTCAGAGTCTCACTGATGAGCAGCTCACTGCAAAAACATTGGAGTTCAGGAGAAGGCTTGGACAGGGGGAGACTCTGGCAGACATTCAAGCTGAGGCTTTTGCGGTTGTTCGTGAAGCTGCAAAACGAAGACTTGGAATGCGCCATTTTGATGTGCAGATTATTGGTGGAGCAGTGCTTCATGACGGTTCAATTGCAGAAATGAAAACGGGCGAAGGGAAAACATTGGTTTCCACACTAGCAGCATATCTTAATGCCCTGACTGGTGAAGGCGTACATGTGGTTACTGTGAATGGTTATCTAGCACAGCGAGATGCGGAGTGGATGGGTCGTGTTCACCGCTTCTTAGGTCTTTCAGTGGGTCTTATACAGAGGGGGATGACAGCCGAAGAGAGAAGGTCCAACTACAAATGTGACATAACGTACACCAATAATTCAGAACTTGGTTTTGATTATCTACGGGATAATCTTGCTGGAAGCAGTGAACAACTTGTGATGAGATGGCCAAAGCCATTCCATTTTGCCATAGTTGATGAAGTTGATTCAGTCCTTATAGATGAAGGAAGAAATCCTCTGTTAATAAGTGGTGAGGCTAGTAAAGATGCCACTCGATATCCAGTTGCTGCTAAAGTGGCTGAACTGCTCGTGCGGGGCCTTCATTACAATGTGGAGCTTAAAGATAATTCAGTGGAGTTGACTGAAGAAGGAATAGCAATGGCTGAGATTGCTCTCGAAACAAATGACTTGTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCATTGAAGGCGAAAGAGTTCTACCGGCCGGATGTTCAATATATTGTTAGAAATGGGAAGGCTTTAATAATAAATGAGCTTACAGGCAGAGTTGAAGAGAAGAGAAGATGGTCAGAGGGAATTCACCAGGCTGTAGAGGCTAAGGAAGGCCTGAAAATTCAGGCTGATTCAGTTGTTGTCGCACAAATAACGTACCAATCACTCTTTAAGCTCTACCCTAAGTTGTCAGGGATGACTGGAACTGCAAAAACTGAGGAGAAAGAGTTTTTGAAAATGTTCCAGATGCCAGTTATTGAAGTGCCCACAAATTTACCAAACATACGTCAAGATTTACCCATCCAAGCATTTGCTACTGCTCGAGGAAAATGGGAATATGTTCGTCAAGAGGTTGACTACATGTTTACACAGGGTCGCCCAGTTTTAGTCGGTACTACTAGTGTAGAGAATTCTGAATACCTATCTGATCTGCTCAAAGAACAAAGAATTCCCCATAACGTTCTCAATGCAAGACCAAAGTATGCTGCAAGAGAAGCTGATATTGTTGCACAAGCTGGTCGGAAATATGCTATAACCATTTCAACTAACATGGCTGGAAGAGGCACTGACATTATCCTTGGAGGAAACCCAAAAATGTTAGCCAGAGAGATTATAGAGGATAGTTTGCTTTCATTTCTTACAAAAGATGATCCTGATATTGAAAAAGATGACGAGACAATTGCACCTAAGGTATTGTCAAAGATAAAGGTTGGACCATCATCATTAGCCTTGCTAGCCAAGACCGCATTAATGGTTAAATATGTATGCAAAAGCCAGGGTAAAAGGTGGACATATAAGGAGGCAAAATCTATAATATTAGAGTCGGTGGAAATGAGTCAATCTATCAATCTGAAACAGTTAGAGAGGCTTGCTGATGAACAGTCTGAAGAATACCCTCTTGGCCCTACAATAGCTCTTGCTTATCTGTCAGTTCTGAAAGATTGTGAGTTACACACTGCAACAGAAGGCTCTGAAGTAAAAAGGCTTGGAGGACTTCATGTTATTGGGACATCATTGCACGAGTCACGTAGAATAGATAACCAGCTTCGTGGGAGAGCAGGAAGACAGGGAGATCCCGGATCAACCCGGTTTATGGTCAGCCTGCAGGATGAGATGTTTCAGAAGTTTAATTTTGACACAGAGTGGGCTGTGAGACTCATTTCAAAAATTACAAATGATGAAGATATACCCATTGAAGGTGATGCAATTGTGAAACAGCTTTTGGCATTGCAAATCAATGCAGAGAAGTACTTCTTCGGCATAAGAAAGAGTTTAGTTGAATTTGATGAAGTATTAGAGGTGCAGCGAAAGCATGTCTATGACCTTAGGCAGTCAATTCTGACTGGAGATAATGATAGTTGCTCCCAGCACATATTGCAGTACATGCAAGCTGTGGCAGATGAGATTGTCTTTAAGCATGTTGATCCGACGAAGCATCCCAGAAGCTGGGGTTTGGGTAAACTCTTGGAGGAGTTCATGACGATTGGAGGGAAACTATTGGATGATGTATGTACCGGAATCACTGAAGAAGCTTTACTAAAAGCACTCTTGCAACCATACCAACTGAGCTCGATAGATATCAACAAAATACAGCTTACTGACTTGCCAACACCTCCTAATGTCTATAGAGGAATCCGGAGGAAAAGTTCTTCATTGAAACGTTGGCTTGCTATCTGCTCTGATGATTTGACTCGCAATGGAAGGTACAGAGAAATTGCAAATATTCTCCGCAAGTACCTTGGCGATTTTCTAATTGCATCCTATTTGGATGTTGTTCAAGAATCTGGTTATGACGATTTATATGTAAAAGAAATTGAGAGAGCAGTTCTTGTGAAGACTCTTGATTGCTTCTGGAGGGATCACCTTATAAACATGAACAGACTCAGCTCAGCGGTTAATGTGAGAAGTTTTGGGCACAGGAATCCTCTCGAGGAATATAAGATTGATGGCTGTCGATTCTTTATATCGATGCTGAGTGTAACAAGAAGGCTAATTGTGGAATCACTCTTGCGCTATTGGTCATCCCCAATGGAGTCTGCAGAAATATTTGTATAA 3177 42.84 MATQPALINSTSFFTSNPPTRHLTFSVSFSIPPSIFRFSRPERRRVFLTSSATATAVAASLIKDNLGRFGKNWTDLTSLNSWVVRDYYRLVHSVNDFEQLIQSLTDEQLTAKTLEFRRRLGQGETLADIQAEAFAVVREAAKRRLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNGYLAQRDAEWMGRVHRFLGLSVGLIQRGMTAEERRSNYKCDITYTNNSELGFDYLRDNLAGSSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDATRYPVAAKVAELLVRGLHYNVELKDNSVELTEEGIAMAEIALETNDLWDENDPWARFVMNALKAKEFYRPDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRQDLPIQAFATARGKWEYVRQEVDYMFTQGRPVLVGTTSVENSEYLSDLLKEQRIPHNVLNARPKYAAREADIVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTKDDPDIEKDDETIAPKVLSKIKVGPSSLALLAKTALMVKYVCKSQGKRWTYKEAKSIILESVEMSQSINLKQLERLADEQSEEYPLGPTIALAYLSVLKDCELHTATEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGDNDSCSQHILQYMQAVADEIVFKHVDPTKHPRSWGLGKLLEEFMTIGGKLLDDVCTGITEEALLKALLQPYQLSSIDINKIQLTDLPTPPNVYRGIRRKSSSLKRWLAICSDDLTRNGRYREIANILRKYLGDFLIASYLDVVQESGYDDLYVKEIERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSVTRRLIVESLLRYWSSPMESAEIFV 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11378712 11387541 + Conep04aG0148100.1 Cone4ag1429 436407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1429 1058 ProSitePatterns SecA family signature. 552 567 IPR020937 GO:0006605(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone4ag1429 1058 NCBIfam preprotein translocase subunit SecA 94 866 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 SUPERFAMILY Pre-protein crosslinking domain of SecA 296 417 IPR036670 GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 Pfam SecA preprotein cross-linking domain 302 408 IPR011130 GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 CDD DEXDc_SecA 108 464 - -
Cone4ag1429 1058 Gene3D Helical scaffold and wing domains of SecA 926 1047 - -
Cone4ag1429 1058 Gene3D Helical scaffold and wing domains of SecA 776 893 - -
Cone4ag1429 1058 PRINTS SecA protein signature 426 443 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 129 153 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 389 411 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 463 476 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 183 193 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 167 181 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 PRINTS SecA protein signature 236 256 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 FunFam Protein translocase subunit SecA 776 895 - -
Cone4ag1429 1058 Gene3D - 88 465 IPR027417 -
Cone4ag1429 1058 Pfam SecA Wing and Scaffold domain 771 1046 IPR011116 GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 754 IPR027417 -
Cone4ag1429 1058 CDD SF2_C_secA 470 741 IPR044722 -
Cone4ag1429 1058 Hamap Protein translocase subunit SecA [secA]. 69 1049 IPR000185 GO:0005524(InterPro)|GO:0006605(InterPro)|GO:0006886(InterPro)
Cone4ag1429 1058 Gene3D - 298 418 - -
Cone4ag1429 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 318 IPR014001 -
Cone4ag1429 1058 SUPERFAMILY Helical scaffold and wing domains of SecA 777 1046 IPR036266 -
Cone4ag1429 1058 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 81 1050 IPR000185 GO:0005524(InterPro)|GO:0005524(PANTHER)|GO:0006605(InterPro)|GO:0006886(InterPro)|GO:0009941(PANTHER)
Cone4ag1429 1058 ProSiteProfiles SecA family profile. 69 773 IPR014018 -
Cone4ag1429 1058 Pfam SecA DEAD-like domain 82 451 IPR011115 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 Gene3D - 467 773 IPR027417 -
Cone4ag1429 1058 SMART SecA_PP_bind_2 297 408 IPR011130 GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 Pfam SecA P-loop domain 467 754 IPR044722 -
Cone4ag1429 1058 SMART SecA_DEAD_2 76 452 IPR011115 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0017038(InterPro)
Cone4ag1429 1058 FunFam Protein translocase subunit SecA 87 310 - -
Cone4ag1429 1058 FunFam Preprotein translocase SecA subunit 298 418 - -
Cone4ag1429 1058 FunFam Protein translocase subunit SecA 917 1046 - -
Cone4ag1429 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 465 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1429 K03070 - - csv:101222972 1748.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0594 Cone-Chr19:5246410 Cone4ag1429 Cone-Chr4:11378712 1.38E-231 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g219 . . . Bda03g00020 . Bpe04g00013 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004074 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 8 1 1 44