Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1438 ATGGTTTTTGAGGAGGAAACCTGCAAAGGGGATGATGATACCAAGTTCACTCTGGATATTGAGTGCTCGAAAAATCGGACACTGGAGAATGGATCTCGGATTAGGTTATGGAATGATGTCAGTGAAGGAGGGTACTCAGTGAATGATGGTTTTCAAACTTACAAGAGGAGGAAGCAGCTCAACTCAAGTTCTCAGAGCAAAGGTCATGGAGATGGCAGGGCATATATTGATACTCCTAATCAATTAGTAGAGCAGGTGGTAAAAAAACCTCGGAACGTACTGAGAGATAACAAGTCGTGTGAACAAGTTCATCTTTATATGAATGGTGTGCTTGAAAATCCACAGAACCATTGGAGAAATGTTGCGCTGAAGCAAATACATCAATCATTGAGGGGTAATGAAGGTGGCATACAGCATTGCATTCAAGATGCAGTTCATTCAAGAAATGATTGTGCCACAGGAGTTGGGAGGGTAACTGTTATGCAGAAATGTGATGGTCAGGTTGACTATAGGCCCAGTGACATTTCACACCCTGTATCAAAATCAAATGGAACTTACAAGGCAGATGATGTGGATCTGGGTCTTGCATCCAATGGATCCTTACAGAAATCATATCAGCACACTCTCACTGAGAGATGTCAACATGCTTTATTCAATGTTATAGTTTCTCAGCAGTTCGCCAGTCTATGTAAGCTGTTGTATGAAAACTTCCAGGGTATCAATGCTAATAATTTTTTCGACTTTAGCCTCATTAACTCAAGGATAAAAGATGGGGCATACGAGAATTCACCTATGCTCTTCTCCTCCGATGTACAACAGATATGGGGGAAAATTCAGGGAATTGGCACTGAATTGATTTCACTAGCAGCTAGCCTTTCTGACATGTCAAGGACTGCTTACCATGAACAGTTTCGTACGTGGGAATCCAACGATCACACTAAAGCAGAGCAAACAGAAGACTGTGGTATCTACAAATTCCGTTGTTGCGGGCAATGTGGAGAACAATATGATGGAAGAGAGCATTTAGTATGCGACTCATGCGAAGAAATTTACCATCTATCTTGCATAAACACTTCTATAGAAGGCAATATTCCCCACAATAATTGGCTATGTGCTAATTGCACTGCATGTGGGATCGGATCACCACATGAGAAGTGTGTGGCGTGTGAGAGACTAAATTCCCCCAAGAACCTCCTCACTAACGGAATTAATGGACAAAGACCTTGTCAAGTGGAAGACTATTCTAATTGGGTCCCAAATTTGAGGTCTTGCAGAATCTGTGGAAATAATGTAGAACAAAGTGACAAACTCCGAAAATGTAGCTATCCTTACTGCCCCAATATATGGTACCATGTAAGGTGCCTGACAAGTAAGCAATTAAGATCATACGGTCCACAATGGTACTGCCCATCTTGCCTTTGCAGAGTGTGCCTTACTGATTGTGATGATGATCAGATTGCTCTGTGCGATGGCTGTGAGCATGCATATCACATTTATTGTATGGAACCTAGTCTCACTTCAGTTCCTAGAGGTAAGTGGTTCTGTAGAAAATGTAGTCAGGGAATCCTGGCAATTCGCGAGGCAAGAGAGGCGTACGAGAAGTTTGGAAGCAAATTGAAGAGAAAGGGCGAAGAGGTATTAATAAAGGCATATAAGAGTCTTGAAAAGGTTGAAAAGGTGCAGCCTAACGAAGGCAGCGAGGAATTGGATAAAGGGGGAGGAGGAATGGACATGCTTCTAACTGCAGCCAAGACTCTAAACTACGAGGAGAATTTGGCTGCCTTTCATCCGAAGAGATGA 1800 42.44 MVFEEETCKGDDDTKFTLDIECSKNRTLENGSRIRLWNDVSEGGYSVNDGFQTYKRRKQLNSSSQSKGHGDGRAYIDTPNQLVEQVVKKPRNVLRDNKSCEQVHLYMNGVLENPQNHWRNVALKQIHQSLRGNEGGIQHCIQDAVHSRNDCATGVGRVTVMQKCDGQVDYRPSDISHPVSKSNGTYKADDVDLGLASNGSLQKSYQHTLTERCQHALFNVIVSQQFASLCKLLYENFQGINANNFFDFSLINSRIKDGAYENSPMLFSSDVQQIWGKIQGIGTELISLAASLSDMSRTAYHEQFRTWESNDHTKAEQTEDCGIYKFRCCGQCGEQYDGREHLVCDSCEEIYHLSCINTSIEGNIPHNNWLCANCTACGIGSPHEKCVACERLNSPKNLLTNGINGQRPCQVEDYSNWVPNLRSCRICGNNVEQSDKLRKCSYPYCPNIWYHVRCLTSKQLRSYGPQWYCPSCLCRVCLTDCDDDQIALCDGCEHAYHIYCMEPSLTSVPRGKWFCRKCSQGILAIREAREAYEKFGSKLKRKGEEVLIKAYKSLEKVEKVQPNEGSEELDKGGGGMDMLLTAAKTLNYEENLAAFHPKR 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11418715 11422443 + Conep04aG0149000.1 Cone4ag1438 436416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1438 599 ProSiteProfiles Zinc finger PHD-type profile. 471 521 IPR019787 -
Cone4ag1438 599 SMART PHD_3 328 375 IPR001965 -
Cone4ag1438 599 SMART PHD_3 423 473 IPR001965 -
Cone4ag1438 599 SMART PHD_3 474 519 IPR001965 -
Cone4ag1438 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 523 IPR013083 -
Cone4ag1438 599 PANTHER OS02G0192300 PROTEIN 114 289 - -
Cone4ag1438 599 ProSiteProfiles Zinc finger PHD-type profile. 326 377 IPR019787 -
Cone4ag1438 599 ProSitePatterns Zinc finger PHD-type signature. 329 374 IPR019786 -
Cone4ag1438 599 Pfam PHD-finger 474 518 IPR019787 -
Cone4ag1438 599 Pfam PHD-finger 329 374 IPR019787 -
Cone4ag1438 599 ProSiteProfiles Zinc finger PHD-type profile. 421 475 IPR019787 -
Cone4ag1438 599 SUPERFAMILY FYVE/PHD zinc finger 320 375 IPR011011 -
Cone4ag1438 599 Gene3D - 245 377 - -
Cone4ag1438 599 SUPERFAMILY FYVE/PHD zinc finger 413 472 IPR011011 -
Cone4ag1438 599 MobiDBLite consensus disorder prediction 56 75 - -
Cone4ag1438 599 SUPERFAMILY FYVE/PHD zinc finger 473 522 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1438 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0136 Cone-Chr2:719689 Cone4ag1438 Cone-Chr4:11418715 6.13E-10 dispersed
Cone4ag1438 Cone-Chr4:11418715 Cone7ag1499 Cone-Chr7:10479208 1.82E-07 dispersed
Cone20ag0418 Cone-Chr20:2042396 Cone4ag1438 Cone-Chr4:11418715 2.04E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46009 PF03735 ENT 1.70E-12 No_clan Cone TR