Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1440 ATGGTGATCATAAAGATCAGCCTTACCGTAGTAGCAATATTTTTAGTAGCAACATCAAAAGTATCATCGGCTCCACCTATAGCCCGTCTTGGCTGCCCCGATAGTTGTGGAGATATCAAAATTCCATACCCATTTGGCATAAGGGAAAAGTGCTCACTTAGTTCAGAATTCGAGATTCGATGTGATACCACCCCTCACCCCCCAATAATTGGCGCTGATGTTGGAATATCAGACATTTCAATGGAATCAGGCGAGCTGCGCATCCTGCAATACTCTGCTCAATCTTGTACTAACCAGTCAGGTGATGAAGTCAGAACGATCGTCAGTGTGCTCTCGGCCGGCTCTTTTAGCATCTCAAGCGAGAAAAACAAGTTGATTGCAACAGGTTGCGACACTTTTGGAATTGTGAATGGTTCTAGAAACGGAATACAACATACGATCGGTTGTGTTAGCATTTGTAGTAATACTACCCATTTAACGACGAATAATGATACGTCGTGTGATGGTGTAGGGTGTTGCCAGATGGAGATTCCAGATGGACTGACAAACGTCCAGGTGAGCGCTAATACGTTGACCAATCATAATGACACCATGGATTTTAATAATTGTAGCTTTGCTACTCTTGTTGAGAAAGATTGGTTCAATTTCTCAACCAAGTATTATTATGAGTTTCCTCCGATGGTCCCTTTAGTGCTTGATTGGGGGTTGGGGAACGAGACGTGTGGTGATAAACCAAATTGTTTGTGTGGCGAACATAGTAAAATGGAAGTCTCCTCCAAGAATAATTCTCAGTACCATTGCAAATGCTTGGAGGGGTTTGAAGGAAATCCATACCTTCATTGCCAAGACATCGACGAATGTAAAGAAAAAAACGGTAACTGCGGATTGCATAGTACATGTGAGAATATAGATGGGAGTTTTACATGTAAGTGCATTAAGGGGTACAAGAAAGATGGAGAAAATTGCATTCCTGTCCAGCACATAAAACTGTACCCTATCTGGATTGGCGTTGGTGTACTTGTGTTGGTGATTGCAGCTTCATGGTCATACTTGGGCTACAGAAAGTGGAAGTTCATCAAGCTTAAGGAAAAGTTCTTTCAGCAAAATGGAGGTTTCTTACTGCAACAAAAACTTTCCAATCATGAAGGACCTAGTCGTAGTCGTGTTATGGCAAAGATATTCACTCAAGAAGAGCTCGAGAAAGCCACCGACAATTATGACCGAAGTAAAATTGTCGGAATAGGTGGTTTCGGAACGGTTTACAAAGGAGTTTTAGCAGATGGTATTACAGTTGCAATAAAAAAGTCAAAGATAATCGATGAAAGTCAAACCGAGCAATTTGTCAACGAAGTTCTTGTTCTTTCTCAAATCAACCATAGAAACGTCGTTCGACTTTTGGGTTGTTGTCTAGAGACGGAAGTCCCGCTCCTCGTTTATGAATTTGTTACTAATGGAACCCTCTCCGACCACATTCACAACAAAAGCAAGTCTTTAAAACTTTCATGGGACGCTCGTTTAAGAATAGCGGCAGAAACTGCAGGAGTTCTAGCATACCTACACAGTTCGGCTGCCACTCCGATAATCCATAGAGATGTCAAGTCTGCAAATGTACTCTTAGACAATTCTTACACTGCAAAAGTTTCGGATTTTGGCGCATCAAGATTAGTTCCGCTTGATCAAACACAACTCTCTACAATAGTTCAAGGAACATTTGGATATTTAGATCCTGAATATTTTCAAACTAATCAGTTAACTGATAAAAGTGATGTTTATAGTTTTGGCGTTGTACTGATCGAGTTAATGACTGGGATGAAGGCAATATGCTTTGATAAGCCGGAAGAGGAAAGGAATCTAGCAAAGAATTTTCTTGTTGCTTTGAAAGAGGACCGATTGGAGGAAATTGTGGAAGATTGTGTAGTGAAAAATACTAGTATTAAGCATCTCAAGGAAGTTGCTTATCTTGCAGGTAGTTGCTTGAGTATTAAAGGGGAGGAAAGGCCTTCCATGAAGGATGTGGCAATGGAGCTTGAGGGTTTGCGAATTTCGATAAATCATTCGTGGATTGTTGATGAGTCGTACCTGGAAGAGACAGATCAGTTGATTTCTGAAAAATTCGCCAATAGCAGTATTAATGATATTGATGCGAGTTACAGTGGCATGACTGATCGTGTACTATTTCCTGCAAGAGATGGTAGATAA 2199 40.84 MVIIKISLTVVAIFLVATSKVSSAPPIARLGCPDSCGDIKIPYPFGIREKCSLSSEFEIRCDTTPHPPIIGADVGISDISMESGELRILQYSAQSCTNQSGDEVRTIVSVLSAGSFSISSEKNKLIATGCDTFGIVNGSRNGIQHTIGCVSICSNTTHLTTNNDTSCDGVGCCQMEIPDGLTNVQVSANTLTNHNDTMDFNNCSFATLVEKDWFNFSTKYYYEFPPMVPLVLDWGLGNETCGDKPNCLCGEHSKMEVSSKNNSQYHCKCLEGFEGNPYLHCQDIDECKEKNGNCGLHSTCENIDGSFTCKCIKGYKKDGENCIPVQHIKLYPIWIGVGVLVLVIAASWSYLGYRKWKFIKLKEKFFQQNGGFLLQQKLSNHEGPSRSRVMAKIFTQEELEKATDNYDRSKIVGIGGFGTVYKGVLADGITVAIKKSKIIDESQTEQFVNEVLVLSQINHRNVVRLLGCCLETEVPLLVYEFVTNGTLSDHIHNKSKSLKLSWDARLRIAAETAGVLAYLHSSAATPIIHRDVKSANVLLDNSYTAKVSDFGASRLVPLDQTQLSTIVQGTFGYLDPEYFQTNQLTDKSDVYSFGVVLIELMTGMKAICFDKPEEERNLAKNFLVALKEDRLEEIVEDCVVKNTSIKHLKEVAYLAGSCLSIKGEERPSMKDVAMELEGLRISINHSWIVDESYLEETDQLISEKFANSSINDIDASYSGMTDRVLFPARDGR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11435233 11437665 + Conep04aG0149200.1 Cone4ag1440 436418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1440 732 SMART egfca_6 283 323 IPR001881 GO:0005509(InterPro)
Cone4ag1440 732 CDD EGF_CA 283 323 - -
Cone4ag1440 732 SMART serkin_6 406 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1440 732 ProSitePatterns EGF-like domain signature 2. 309 322 IPR000742 -
Cone4ag1440 732 SUPERFAMILY EGF/Laminin 280 330 - -
Cone4ag1440 732 FunFam Wall-associated receptor kinase 2 482 699 - -
Cone4ag1440 732 ProSiteProfiles EGF-like domain profile. 283 323 IPR000742 -
Cone4ag1440 732 Pfam Protein tyrosine and serine/threonine kinase 409 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1440 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1440 732 SUPERFAMILY Protein kinase-like (PK-like) 381 677 IPR011009 -
Cone4ag1440 732 CDD STKc_IRAK 412 679 - -
Cone4ag1440 732 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247(InterPro)
Cone4ag1440 732 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Cone4ag1440 732 ProSiteProfiles Protein kinase domain profile. 406 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1440 732 FunFam Fibrillin 2 278 323 - -
Cone4ag1440 732 Gene3D Transferase(Phosphotransferase) domain 1 482 695 - -
Cone4ag1440 732 FunFam Wall-associated receptor kinase 2 373 481 - -
Cone4ag1440 732 Gene3D Phosphorylase Kinase; domain 1 377 481 - -
Cone4ag1440 732 Pfam Calcium-binding EGF domain 283 322 IPR049883 -
Cone4ag1440 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 690 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone4ag1440 732 SMART egf_5 240 282 IPR000742 -
Cone4ag1440 732 SMART egf_5 286 323 IPR000742 -
Cone4ag1440 732 ProSitePatterns Calcium-binding EGF-like domain signature. 283 309 IPR018097 GO:0005509(InterPro)
Cone4ag1440 732 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524(InterPro)
Cone4ag1440 732 Gene3D Laminin 238 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0432 Cone-Chr18:2104882 Cone4ag1440 Cone-Chr4:11435233 1.14E-85 dispersed
Cone4ag1440 Cone-Chr4:11435233 Cone7ag1497 Cone-Chr7:10467632 0 dispersed
Cone4ag1439 Cone-Chr4:11433436 Cone4ag1440 Cone-Chr4:11435233 1.89E-16 tandem
Cone12ag0207 Cone-Chr12:1056549 Cone4ag1440 Cone-Chr4:11435233 1.34E-74 transposed
Cone12ag0208 Cone-Chr12:1057438 Cone4ag1440 Cone-Chr4:11435233 8.14E-79 transposed
Cone17ag1312 Cone-Chr17:9314587 Cone4ag1440 Cone-Chr4:11435233 1.11E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82791 PF03735 ENT 2.40E-28 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1440 - - - 0.0