Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1441 ATGGCTGGCAATGCTGCAGCCTGTGCTGAGAGGGCAACTAGTGAGATGCTGATTGGTCCAGACTGGTCCGTTAACATTGAGCTTTGTGATATTATCAATCTGGATCCTGGACAAGCCAAGGATACCTTGAAGGTACTCAAGAAGCGCATTGGAAGCAAAAGCCATGAAGTGCAGCTTTTAGCTCTTTTTGCATTGGAGACTCTGAGCAAGAATTGCGGCGAGAATGTATTTCAGCATATTATCGAGTGCGATATCATAACCGACATGGTCAAAGTAGTAAAAAAGAAGCCTCGTCTGAATGTGAAGGACAAGATACTAACTTTGATAGATGCATGGCAAGAGGCTGTAGGCGGTCCGAGGGGAAGATTTCCTCAATATTATGCAGCTTACAATGAATTAAAGAATTCTGGAGTTCAGTTTCCACCTAGAGAAGAAAATGCTGTATCGTACTTTACTTCGTCTGAAACAACAACCAATCGAAGAAGTCCGGATATGGCTTCAGCTTCTGATATTCTTTCTCGGGTCGCTCCTCAAAATGATGCTTCTGGCCTAGGCTTGTTAGAAATACAGAATGCAAGTGGAATAGTGGACGTGTTGCTGGAAATGCTTGGTGCCTTGGATCAGAAGAATCCTGAGGGTGTGAAGCAAGAAGTGATTGTTGAACTTGTTGACCAGTGCTGTTTGTACCAAAAGCGCGTCATGCTTCTTGTCAATGATACCGTAGATGAACAATTTTTATGTCAAGGATTAGCATTAAACGACAGATTCCAGCATGTACTTACCCTACATGATGACATTGCTAACGGAAAAACTTCCACAGCAGAAGTAAAGTCTACACGATTTTCAATCAAACCAAATCTGGAAGTAAAATATGACGATGATGAGTCCGAAGATGACTTTGCCCAGCTAACTCGAAGGTCATCCAGTGTGAATGTTCAAGGACATAGTAGAAAATCATCCGACGATGCTGGTTACTCGGAACTGCTCCGGGTCCCATTTCTTCCCCCTCCTCCATCTGCTCCAGAAAAGCTCTCTTTTTCAAATGCGGGCCCAGTTGACTATCTCAGTGGTGATTTTTACACATCTCAAGGATCTTCAGATCAGTTTAAGGCAACTCCATCTTCTTCACCATCTCTTAATAATCATGGTTTGAACTCCTCATCAATATCAGGCCCACCTGTATATGATATATCAGCTTCTAGAAGCAGTTCGGCTGATCCGCTTCCTCCGATCTTATGGGATATTGGTCAGTCGTCTCCTGGCTCTAATCTCTCATATACTCCACCTCTATATTATAATGAGAGACAACGTTCTTTTGACAAACCACCTATATCGATTAATAAGGGTATTTCGAGGTCGAGTAGTAGCATATTGGGCTCTTCTTCTTATGACGACTTAGTTGGACAGACACATACTTTGTCTCTAAATTCGGCGGAGCCGAAAAAACATGGGAATACTGGCGATGGTTTGTTTGTGGATATATTTGACTTTGGAAAAGTCAACTCATCTTCTTCCTCAAATCCCAACAGACCATTCTGA 1539 42.63 MAGNAAACAERATSEMLIGPDWSVNIELCDIINLDPGQAKDTLKVLKKRIGSKSHEVQLLALFALETLSKNCGENVFQHIIECDIITDMVKVVKKKPRLNVKDKILTLIDAWQEAVGGPRGRFPQYYAAYNELKNSGVQFPPREENAVSYFTSSETTTNRRSPDMASASDILSRVAPQNDASGLGLLEIQNASGIVDVLLEMLGALDQKNPEGVKQEVIVELVDQCCLYQKRVMLLVNDTVDEQFLCQGLALNDRFQHVLTLHDDIANGKTSTAEVKSTRFSIKPNLEVKYDDDESEDDFAQLTRRSSSVNVQGHSRKSSDDAGYSELLRVPFLPPPPSAPEKLSFSNAGPVDYLSGDFYTSQGSSDQFKATPSSSPSLNNHGLNSSSISGPPVYDISASRSSSADPLPPILWDIGQSSPGSNLSYTPPLYYNERQRSFDKPPISINKGISRSSSSILGSSSYDDLVGQTHTLSLNSAEPKKHGNTGDGLFVDIFDFGKVNSSSSSNPNRPF 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11443508 11445968 - Conep04aG0149300.1 Cone4ag1441 436419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1441 512 MobiDBLite consensus disorder prediction 363 388 - -
Cone4ag1441 512 Pfam GAT domain 196 268 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone4ag1441 512 Gene3D - 3 141 IPR008942 -
Cone4ag1441 512 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Cone4ag1441 512 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone4ag1441 512 FunFam TOM1-like protein 2 4 151 - -
Cone4ag1441 512 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone4ag1441 512 Pfam VHS domain 10 130 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone4ag1441 512 CDD GAT_GGA-like_plant 188 266 - -
Cone4ag1441 512 SUPERFAMILY GAT-like domain 181 270 - -
Cone4ag1441 512 CDD VHS 10 135 - -
Cone4ag1441 512 SMART VHS_2 5 137 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cone4ag1441 512 PANTHER TOM1-LIKE PROTEIN 1 509 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cone4ag1441 512 Gene3D - 186 275 IPR038425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1441 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0607 Cone-Chr20:3572734 Cone4ag1441 Cone-Chr4:11443508 5.17E-84 dispersed
Cone4ag1233 Cone-Chr4:10260541 Cone4ag1441 Cone-Chr4:11443508 9.13E-89 dispersed
Cone4ag1441 Cone-Chr4:11443508 Cone7ag0903 Cone-Chr7:7094636 6.52E-88 dispersed
Cone17ag0809 Cone-Chr17:6396646 Cone4ag1441 Cone-Chr4:11443508 3.03E-150 wgd
Cone20ag0414 Cone-Chr20:2012290 Cone4ag1441 Cone-Chr4:11443508 2.57E-151 wgd
Cone4ag1441 Cone-Chr4:11443508 Cone7ag1494 Cone-Chr7:10458333 1.61E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76