Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1444 ATGGGTTCTGATCTCCATTCTCTTGCTCGACTACTTCAAACCTGTAACTTGATTCATCAAGGAAGACAAGTCCACGTCCTTTTTCTGAAGAAGGGCATTCTTGGTTCTTTTGTCTCATTTGGGAACCGCCTTCTACAATTCTATGCACGTTGTGGGAGTATGAATGATGCATGTATGCTGTTCGATGATATGCCTCAGAGAAACTGTTTCTCTTGGAACACCATGATTGAAGGCTACATTAAATCAGGGGATGAGAAGACGTCTCTAGAGATGTTTAATCACATGCCGGACAAGAATGATTTCAGCTGGAACATGATAATTTCTGCGTTTGTAAAATCTGGTCAGCTTAATATTGCTCGGGCTCTGTTTAATGATATGCCAAAAAAGAATGGAACAGCTTGGAACTCAATCATTCATGGATATTCCAGAAATGGGTTTCCAGGAAAAGCTCTGAAGCTTTTTCAAGAGTTGAGTTTGAACCCATTAGAAATCTTATGCATCGATAGCTTTGTACTGGCAACAGTCATTGGGGCTTGTAGTGATCTTCCTGCTCTTAATTGCGGAAAGCAAATCCATGCTCGTATTTTGATCAATGGACTGGAATTGGACACGGTTTTATGTAGCCGGCTTATCAATCTGTACGGAAAATGCTGTAACTTGGATTTTGCAAATCATTTCCTGAATATGATGAAGGAACCAGATGACTTCTCTCTTTCAGCACTGATTTCTGGCTATGCAAAATCTGGTAGAACATTAGATGCAAGAAAGATTTTAGACTGCAAAACTAATCCTTGTCCTGCTTTATGGAATTCAATGATATCTGGATATGTTTCCAATAGCGAGGAAATAGAAGCTTTGTTTCTCTTCAATGAAATGCGAAAAAATGGAGCTTGTTCAGACCCCTCTACTCTGGGAAGCATTTTAAGTGGTAGTACTAGCATAGGATTTTTTCAACACAGTAAGCAAATGCATTCACTTGCGGGAAAAATCGGACTAATCCAGGACCTCATCGTTGCTAGTTCTCTAATTGATGCATATTCCAAGAGTGGAAATTTTCATGATGCTTGTAAATTATTCATTGAGCTCAAAGCCCAGGACACGATCTTGCTCAATTCCATGATAACCGTTTATTCTACATGTGGAAGAATTGAAGACGCAAAACGGGTGTTTGAGACAATCCCGAAGAAAACATTGGTGTCGTGGAATTCAATGATAGTTGGTTTAAGTCAAAATGGGTGTCCAATTGAAGCAATACATCTTCTTTGTGATATGAATAAGTTGGGTTTAAAAATGGACAAATTCAGTATAGCCAGTGTCATAAGTGCTTGTGGCTGTATTTCTTCGCTCGAACTAGGTGAACAGGTTTTCTCTAAAGCGACTGTGCTTGGTCTTGAATCTGATCCGATCGTTTCTACCTCACTTGTCGATTTATATAGCAAGTGTGGTCTTGTTCAAAACGGGAAGAGAATATTCGATTCGATGATTCAATTAGACGAAATAGCTTGGAACTCTATGCTGACGGGTTATGCTACAAACGGTTATGGACCAGAAGCATTGGATTTGTTCGAAAAAATGAGGCAGGCCCGGGTAAGCCTGAACAGAATTACATTTACTAGTGTTCTTTCGGCCTGTGGTCATTGTGGGTTGCTTGAAGAAGGAAGAAAATTGTTTGATTTGATGAAAAGTGAGTATTTTATTGAACCGGGTATAGAACACTACTCTTGCTTGGTGGATCTTTTTTCAAGGGCAGGGTGTCTTGAGGAAGGGATGGCTCTTATAGCAGAGATGCCGTTTGAGGCGGACATAAGCATGTTGTCTTCTTTGTTAAGAGGGTGTGTAGCTCATGGGAACAAGAGCGTAGGGAAGAAAGTGGGTGAGAAGTTGATTAAGCTTGACCCAGAAAACTCAAGTGCCCATGTTCAATTAGCGAGTGTACTGGCAAGTTCAGGGGATTGGGAAGAATCTGCCAAAATTAGGGATGTTATGAGGGAGAAGAGAATGCAAAAAATTGCTGGTCATAGTTGGGCTGGTATTGCTTTTTGA 2043 40.38 MGSDLHSLARLLQTCNLIHQGRQVHVLFLKKGILGSFVSFGNRLLQFYARCGSMNDACMLFDDMPQRNCFSWNTMIEGYIKSGDEKTSLEMFNHMPDKNDFSWNMIISAFVKSGQLNIARALFNDMPKKNGTAWNSIIHGYSRNGFPGKALKLFQELSLNPLEILCIDSFVLATVIGACSDLPALNCGKQIHARILINGLELDTVLCSRLINLYGKCCNLDFANHFLNMMKEPDDFSLSALISGYAKSGRTLDARKILDCKTNPCPALWNSMISGYVSNSEEIEALFLFNEMRKNGACSDPSTLGSILSGSTSIGFFQHSKQMHSLAGKIGLIQDLIVASSLIDAYSKSGNFHDACKLFIELKAQDTILLNSMITVYSTCGRIEDAKRVFETIPKKTLVSWNSMIVGLSQNGCPIEAIHLLCDMNKLGLKMDKFSIASVISACGCISSLELGEQVFSKATVLGLESDPIVSTSLVDLYSKCGLVQNGKRIFDSMIQLDEIAWNSMLTGYATNGYGPEALDLFEKMRQARVSLNRITFTSVLSACGHCGLLEEGRKLFDLMKSEYFIEPGIEHYSCLVDLFSRAGCLEEGMALIAEMPFEADISMLSSLLRGCVAHGNKSVGKKVGEKLIKLDPENSSAHVQLASVLASSGDWEESAKIRDVMREKRMQKIAGHSWAGIAF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11466972 11471254 + Conep04aG0149600.1 Cone4ag1444 436422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1444 680 FunFam Pentatricopeptide repeat-containing protein chloroplastic 550 676 - -
Cone4ag1444 680 Pfam PPR repeat 42 69 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 269 296 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 133 157 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 70 99 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 572 596 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 399 429 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 237 259 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 371 393 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 101 130 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 472 496 IPR002885 -
Cone4ag1444 680 Pfam PPR repeat 340 363 IPR002885 -
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 163 323 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 101 130 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 70 98 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 340 365 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 133 157 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 268 298 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 535 563 IPR002885 -
Cone4ag1444 680 NCBIfam pentatricopeptide repeat 501 533 IPR002885 -
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 563 IPR002885 -
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 99 160 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 PANTHER OS07G0578800 PROTEIN-RELATED 4 130 IPR045215 GO:0003723(InterPro)|GO:0009451(InterPro)
Cone4ag1444 680 Pfam PPR repeat family 498 545 IPR002885 -
Cone4ag1444 680 Pfam E motif 615 675 IPR046848 -
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 545 672 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Cone4ag1444 680 SUPERFAMILY TPR-like 345 656 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 98 IPR002885 -
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Cone4ag1444 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cone4ag1444 680 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 452 548 - -
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 447 544 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 324 446 IPR011990 GO:0005515(InterPro)
Cone4ag1444 680 Gene3D Tetratricopeptide repeat domain 2 98 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1444 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1444 Cone-Chr4:11466972 Cone20ag0308 Cone-Chr20:1377345 1.78E-80 dispersed
Cone7ag1491 Cone-Chr7:10441319 Cone4ag1444 Cone-Chr4:11466972 2.48E-42 transposed
Cone20ag0413 Cone-Chr20:2006919 Cone4ag1444 Cone-Chr4:11466972 6.93E-60 wgd
Cone4ag1444 Cone-Chr4:11466972 Cone7ag1490 Cone-Chr7:10440490 2.27E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016657 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6