Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1445 ATGTCGTCGTCGATCATGGGGAGTAATAGTAATCCCAGACGCTCGCCATCGTACGTGATTATCGCATGCGATGCGACTAGAGATCGCAATGAACACGAGTTTAAGCTCACCATTGAAGCCGTCAAGATGAGGGGCGATATCCTTCATGCTGGTAGCAAGCTTCTTGTGCTTGGTGTTCTCGACAGGGTTCCTCACCCTATGGGATATCAGTTAAAAGCATGCCCTGAATCGTTTGCTGGAACCGTGGTTCGAGCTATGGAGGAAGAAGTTTCAAGGAGGGTTGATACTTATGTCGGCATGCTCATGCAAAGTGCTGACAAGTGTCAACATGAAGGGGTCAGCATTGAAGTCAGGGTGACAGCTGGATATCCAACTAAGCAGGTCATTTTACAAGAGGTTGCGGCATGTAATGCAAGTTGGATTATACTTGATCGGCACCTAAGGCGCGATTTAAGGTACTACCTAAGACAGATACCTTGCAAGATTGCCTCAATCCATGACAGCTTAGCTGTAGAAGTAGAGAGAACACTTGCTACATTTGAAGCAGATGCTATAGAACAAAAGGTGTTCTACTCTGCATCCAAGCTCGTCCCTTCATTGGATTGGCAAGCCCCTGAAATCACTGACCACTCTCCTGTTATAAGCCGTCAGAGAAGCTACCCATCATTATCCATTGCTTCGCAAGAAAGATCTGGTTCCGGGATTTTCTCATATCCAACTTCTTCACTGTCCTCTTCTAAGCAGGAAAAAATAGGTACTTTTAGTAAAGGAGTGCATATAGAGTCGGAGGCTTTCCAATTAGTCAAAACTCAAAGCAAAAATTTTCTTCAACAAAGATTGTCAGAAGCGCCGATTCTGTGTTCGGCTTGTGGGACAAGGAGTGATTTGCATATAAAGGAATCGTTGAGGTTCACTTATTCGGAAATTCAGGCTGCGACTAATGATTTTTCGAAGGAAAACTTGATAGGGGAAGGTGGGTATGGTTATGTATATAAGGGCGAGCTTAAAGATGGACAGCATATTGCAGCCAAGGTAAGGAAAGAGACAAGCACACAAGGTTTTTCTGAGTTTAATTCCGAGGTTTTTGTACTAAATTTTGCACGGCATAAGAACATCATGATGCTCTTGGGTTATTGCTGCAAGGAGAAACTTAATATCTTGGTCTATGAGTATGTCTGCAATAATTCTCTTGAATGGCATTTATTTGACAAAGAGAAAAAAACAGTTCTTGATTGGCACCAAAGACATGCTGTTGCTGTTGGAACTGCAAAAGCACTGAGGTTTCTGCATGAAGAATGCCGTGGAGGTCCAATTATTCATAGGGATGTTAGACCGAACAATGTACTTCTCACACATGACTTTGTTCCCATGCTTGGTGACTTTGGCCTTGCGAAATGGAAGACGGGTGAGGGTCCTTTGCACACAAGGGTACTTGGCACACTTGGATATCTTGCTCCGGAATATGCAGAAAATGGGATTCTTTCAGTGAGAACAGATGTATATGCATTTGGCATTGTTCTGTTACAGCTTATAACGGGGCGAAAGGTGAGCAACACAGAAGGGGAAGACCAACATCAATCTCTACGACAATGGGCTGAGCCATTGATTCAAAACTTAGAGTTACATGAATTGATCGATCCTCGTCTTGAGAAGGCTTACGACACGTACGAATTGTATCTCATGTCAAAGACAGCATTCTTATGTGCACAAAAAAATCCAGAGTTGCGACCTTCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGAGAGAGCGACCATTTCCGCTACTTGGAAGAGCAGTTTGTCCCCCATTTCCCAAAGTAA 1821 43.77 MSSSIMGSNSNPRRSPSYVIIACDATRDRNEHEFKLTIEAVKMRGDILHAGSKLLVLGVLDRVPHPMGYQLKACPESFAGTVVRAMEEEVSRRVDTYVGMLMQSADKCQHEGVSIEVRVTAGYPTKQVILQEVAACNASWIILDRHLRRDLRYYLRQIPCKIASIHDSLAVEVERTLATFEADAIEQKVFYSASKLVPSLDWQAPEITDHSPVISRQRSYPSLSIASQERSGSGIFSYPTSSLSSSKQEKIGTFSKGVHIESEAFQLVKTQSKNFLQQRLSEAPILCSACGTRSDLHIKESLRFTYSEIQAATNDFSKENLIGEGGYGYVYKGELKDGQHIAAKVRKETSTQGFSEFNSEVFVLNFARHKNIMMLLGYCCKEKLNILVYEYVCNNSLEWHLFDKEKKTVLDWHQRHAVAVGTAKALRFLHEECRGGPIIHRDVRPNNVLLTHDFVPMLGDFGLAKWKTGEGPLHTRVLGTLGYLAPEYAENGILSVRTDVYAFGIVLLQLITGRKVSNTEGEDQHQSLRQWAEPLIQNLELHELIDPRLEKAYDTYELYLMSKTAFLCAQKNPELRPSMGEVVRLLEGESDHFRYLEEQFVPHFPK 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11471892 11474968 + Conep04aG0149700.1 Cone4ag1445 436423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1445 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1445 606 Gene3D HUPs 11 162 IPR014729 -
Cone4ag1445 606 SMART tyrkin_6 316 586 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone4ag1445 606 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 288 391 - -
Cone4ag1445 606 Gene3D Phosphorylase Kinase; domain 1 286 391 - -
Cone4ag1445 606 Gene3D Transferase(Phosphotransferase) domain 1 393 599 - -
Cone4ag1445 606 SUPERFAMILY Protein kinase-like (PK-like) 300 588 IPR011009 -
Cone4ag1445 606 PANTHER OS01G0750732 PROTEIN 249 589 IPR050885 -
Cone4ag1445 606 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524(InterPro)
Cone4ag1445 606 ProSiteProfiles Protein kinase domain profile. 316 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1445 606 CDD STKc_IRAK 322 588 - -
Cone4ag1445 606 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 392 594 - -
Cone4ag1445 606 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1445 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1445 Cone-Chr4:11471892 Cone7ag1209 Cone-Chr7:8992308 1.01E-99 dispersed
Cone4ag1445 Cone-Chr4:11471892 Cone6ag1328 Cone-Chr6:10720027 1.80E-61 wgd
Cone4ag1445 Cone-Chr4:11471892 Cone7ag1489 Cone-Chr7:10436979 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82792 PF14736 N_Asn_amidohyd 7.90E-86 No_clan Cone PK