Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1446 ATGTCGTCTAGGGATCCAGATTCCCTCTTCAGTGGTGGCGGTATCAGCTTTCTGACTGGGAGCCGGAATGGAAGGTTCAGCTATGGCTATTCCAGTTTCAAAGGCAAAAGATCTTCAATGGAGGATTACTTTGAGACAAAAGTTTCAGAGGTTGATGGTCAGATGGTCGCCTTTTTTGGAGTTTTTGATGGTCATGGAGGCTCCAGAACAGCAGAATACCTCAAAAACAACCTTTTCAAGAATTTAAGTAGCCATCCAGAGTTCATCACCGATACAAAGACTGCTATTGTGGAGGTGTTTAGAAAGACAGATGCTGATTATCTCAATGAAGAAAAAGGACAGCAAAAAGATGCTGGGTCAACTGCGACCACTGCTCTCTTAGTTGGGGACCGCCTCCTCATCGCTAATGTTGGTGATTCCAGAGTCGTTGCCTCTAGAGGTGGTTCAGCTATTCCGCTATCAATTGATCATAAACCTGATAGGTCTGATGAACGGAAAAGGATTGAACAGGCTGGAGGTTTTATTATTTGGGCAGGAACCTGGCGTGTGGGTGGGATTCTTGCTGTTTCTCGGGCCTTTGGAGACAAGTTATTGAAGCCGTATGTGGTTGCAGAACCAGAGATTCAGGAGGAAGAAATTCATGGGGTAGATTTTATAATTATTGCTAGTGATGGGCTTTGGAATGTGATATCGAATAGGGATGCCGTAGGTTTAGTGCAAGATATACAAGACGCGGAAGTGGCATCAAGGAAGCTAATAGAAGCAGCTTATTCCCGAGGGAGTTCGGACAACATTACATGTGTTGTTGTCCGATTCGATTTAGCCTGA 828 44.69 MSSRDPDSLFSGGGISFLTGSRNGRFSYGYSSFKGKRSSMEDYFETKVSEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPEFITDTKTAIVEVFRKTDADYLNEEKGQQKDAGSTATTALLVGDRLLIANVGDSRVVASRGGSAIPLSIDHKPDRSDERKRIEQAGGFIIWAGTWRVGGILAVSRAFGDKLLKPYVVAEPEIQEEEIHGVDFIIIASDGLWNVISNRDAVGLVQDIQDAEVASRKLIEAAYSRGSSDNITCVVVRFDLA 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11479275 11481846 - Conep04aG0149800.1 Cone4ag1446 436424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1446 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Cone4ag1446 275 PANTHER PROTEIN PHOSPHATASE 27 270 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag1446 275 SUPERFAMILY PP2C-like 19 273 IPR036457 -
Cone4ag1446 275 SMART PP2C_4 16 270 IPR001932 -
Cone4ag1446 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169(InterPro)
Cone4ag1446 275 FunFam probable protein phosphatase 2C 59 19 274 - -
Cone4ag1446 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Cone4ag1446 275 CDD PP2Cc 26 272 IPR001932 -
Cone4ag1446 275 Gene3D - 19 274 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1446 Cone-Chr4:11479275 Cone4ag1725 Cone-Chr4:12767565 1.12E-125 dispersed
Cone14ag0002 Cone-Chr14:28189 Cone4ag1446 Cone-Chr4:11479275 2.39E-32 transposed
Cone4ag1446 Cone-Chr4:11479275 Cone5ag0192 Cone-Chr5:795244 8.89E-47 wgd
Cone4ag1446 Cone-Chr4:11479275 Cone7ag1486 Cone-Chr7:10425499 4.67E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1446 K17506 - rcu:8270424 487.263