Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1449 ATGTCATATAGAAGCCCCAAGCTCTACTCCTTAAAAGCCAGGAATACTGGCCCCGCCTTATCCACTCAATCTCTAACTTCTGAGAAACATTTGGATTCTTACAGCAATGAGAGTTATGAAAAGTACTTCCTCGACTCCCCATCTGAAGAACTAGCCTCCTACAATTCCAACACCTCTTCCAACTCGTTTCCTCACCCACAAGGCATCTCTTATGTAGTAGAAACCCAAAGCCCAGATACAATTGAATATGACGAGGGTCAAATGAGGTTAAAGCTACAAGAACTTGAGAGAACCCTTTTAGGTGATTATGATGAGAACCAAAGCATGGAGATTGATGGGGAATTGGCAGAATCTCCCAAGGAATATTCTTCATCCTCGGATTCTAATTTAAGCAGTATCAGTTCCAACAACAAGGACACATTACAAGTCTCCACTCGAAGAAAACCAAAACAGATGCTTCTAGAATGTGCAGCCGCTCTATCAGAAGGGAACATAGAGGAAGCATCCATCATGATCGATCAGTTAAGGCAGATGGTCTCGATCCAAGGAGAGCCGCCGCAGAGGATCGCTGCCTACATGGTTGAAGGTTTAGCTGCCAGGCTGGCAAGTTCTGGCAAGTCTCTTTACAAAGCCTTGAAATGCAAAGAGCCTCCTTCTTCTGACCGGCTCGCTGCTATGCAGATACTCTTCGAGGTCTGCCCTTGTTTCAAATTCGGATTTGTCGCTGCAAACGGAGCCATTCTAGAAGCTTTTAGAGATGAGAAGAGAGTTCATATTGTAGATTTTGATATTAGCCAAGGTACTCAGTACATAACACTGATTCAAACAATAGCTAATCAGGGAACTAAGCCCCTGCCTTATTTGAGACTGACTGGAATTGATGATCCGGAATCGGTCCAAAGGCATGTAGGAGGTCTTAAAAATATCGGGCAGAGGCTCGAAAAGCTGGCAGAAGTATTGCGGGTCCCATTTGAGTTCCGGGCAGTGGCTTCCAACACTTCTATTGTTACTCCCTCTATGCTTGAATGCCGTCCAGGAGAAGCACTTATAGTGAATTTTGCCTTTCAGCTTCACCATATGCCGGATGAAAGTGTTTCTACAGTGAATCTAAGAGACCAGCTTCTGAGAATGGCGAAGAGCTTGAACCCGAAACTAGTAACGGTTGTGGAGCAAGATGTGAATACCAACACGTCCCCATTTATTCCGAGGTTTATGGAGGCTTATAACTACTATTCGGCTGTTTTTGAGTCGCTTGATGTGACTCTGCCAAGAGAGAGTCAGGATAGGATGAATGTGGAGAGGCACTGTTTGGCGAGGGATATTGTGAATATTGTTGCTTGTGAGGGGGAGGAGAGGATTGAACGGTACGAGGTTGCTGGGAAATGGAGGGCAAGGATGATGATGGCGGGTTTCACTCCATGCCCGATGAGCTCGAGTGTATTGGATTCTATTAGGAAGCTTATAAGGGAGTATTGTGATAAGTATAAGGTGAAGGAAGAAATGGGTGCTCTTCATTTTGGATGGGGGGAGAAAAGCTTGATCGTTGCTTCTGCATGGAGGTAG 1563 45.17 MSYRSPKLYSLKARNTGPALSTQSLTSEKHLDSYSNESYEKYFLDSPSEELASYNSNTSSNSFPHPQGISYVVETQSPDTIEYDEGQMRLKLQELERTLLGDYDENQSMEIDGELAESPKEYSSSSDSNLSSISSNNKDTLQVSTRRKPKQMLLECAAALSEGNIEEASIMIDQLRQMVSIQGEPPQRIAAYMVEGLAARLASSGKSLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFVAANGAILEAFRDEKRVHIVDFDISQGTQYITLIQTIANQGTKPLPYLRLTGIDDPESVQRHVGGLKNIGQRLEKLAEVLRVPFEFRAVASNTSIVTPSMLECRPGEALIVNFAFQLHHMPDESVSTVNLRDQLLRMAKSLNPKLVTVVEQDVNTNTSPFIPRFMEAYNYYSAVFESLDVTLPRESQDRMNVERHCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTPCPMSSSVLDSIRKLIREYCDKYKVKEEMGALHFGWGEKSLIVASAWR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11499843 11502947 + Conep04aG0150100.1 Cone4ag1449 436427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1449 520 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 519 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone4ag1449 520 MobiDBLite consensus disorder prediction 119 142 - -
Cone4ag1449 520 MobiDBLite consensus disorder prediction 1 32 - -
Cone4ag1449 520 Pfam GRAS domain family 150 520 IPR005202 -
Cone4ag1449 520 MobiDBLite consensus disorder prediction 115 145 - -
Cone4ag1449 520 ProSiteProfiles GRAS family profile. 140 520 IPR005202 -
Cone4ag1449 520 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0063 Cone-Chr14:349890 Cone4ag1449 Cone-Chr4:11499843 9.56E-82 dispersed
Cone15ag0066 Cone-Chr15:372697 Cone4ag1449 Cone-Chr4:11499843 3.31E-82 dispersed
Cone4ag1449 Cone-Chr4:11499843 Cone6ag0094 Cone-Chr6:455288 5.41E-137 dispersed
Cone4ag1449 Cone-Chr4:11499843 Cone7ag1483 Cone-Chr7:10404947 1.33E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46011 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1449 K27748 - mdm:103407439 713.375